Strain Fitness in Escherichia coli BL21 around ECD_03684

Experiment: Bas18

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03681 and ECD_03682 are separated by 39 nucleotidesECD_03682 and ECD_03683 overlap by 210 nucleotidesECD_03683 and ECD_03684 are separated by 451 nucleotidesECD_03684 and ECD_03685 are separated by 36 nucleotidesECD_03685 and ECD_03686 overlap by 4 nucleotides ECD_03681: ECD_03681 - adenylate cyclase, at 3,881,423 to 3,883,969 _03681 ECD_03682: ECD_03682 - iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein, at 3,884,009 to 3,884,329 _03682 ECD_03683: ECD_03683 - hypothetical protein, at 3,884,120 to 3,884,347 _03683 ECD_03684: ECD_03684 - putative lipoprotein, at 3,884,799 to 3,885,002 _03684 ECD_03685: ECD_03685 - diaminopimelate epimerase, at 3,885,039 to 3,885,863 _03685 ECD_03686: ECD_03686 - DUF484 family protein, at 3,885,860 to 3,886,567 _03686 Position (kb) 3884 3885 3886Strain fitness (log2 ratio) -2 -1 0 1 2at 3883.809 kb on - strandat 3883.848 kb on - strandat 3883.950 kb on + strandat 3883.950 kb on + strandat 3883.951 kb on - strandat 3883.951 kb on - strandat 3883.951 kb on - strandat 3884.084 kb on - strand, within ECD_03682at 3884.180 kb on - strandat 3884.207 kb on - strandat 3884.335 kb on + strandat 3884.335 kb on + strandat 3884.362 kb on + strandat 3884.363 kb on - strandat 3884.442 kb on + strandat 3884.442 kb on + strandat 3884.442 kb on + strandat 3884.443 kb on - strandat 3884.443 kb on - strandat 3884.443 kb on - strandat 3884.445 kb on + strandat 3884.445 kb on + strandat 3884.446 kb on - strandat 3884.446 kb on - strandat 3884.446 kb on - strandat 3884.451 kb on + strandat 3884.451 kb on + strandat 3884.452 kb on - strandat 3884.452 kb on - strandat 3884.452 kb on - strandat 3884.452 kb on - strandat 3884.452 kb on - strandat 3884.452 kb on - strandat 3884.453 kb on + strandat 3884.454 kb on - strandat 3884.455 kb on + strandat 3884.456 kb on - strandat 3884.456 kb on - strandat 3884.490 kb on - strandat 3884.520 kb on + strandat 3884.521 kb on - strandat 3884.523 kb on + strandat 3884.523 kb on + strandat 3884.523 kb on + strandat 3884.610 kb on + strandat 3884.611 kb on - strandat 3884.647 kb on - strandat 3884.659 kb on + strandat 3884.659 kb on + strandat 3884.660 kb on - strandat 3884.674 kb on - strandat 3884.682 kb on + strandat 3884.683 kb on - strandat 3884.760 kb on + strandat 3884.760 kb on + strandat 3884.761 kb on - strandat 3884.813 kb on + strandat 3884.813 kb on + strandat 3884.827 kb on + strand, within ECD_03684at 3884.827 kb on + strand, within ECD_03684at 3884.827 kb on + strand, within ECD_03684at 3884.830 kb on + strand, within ECD_03684at 3884.834 kb on + strand, within ECD_03684at 3884.834 kb on + strand, within ECD_03684at 3884.834 kb on + strand, within ECD_03684at 3884.894 kb on + strand, within ECD_03684at 3884.895 kb on - strand, within ECD_03684at 3885.000 kb on + strandat 3885.000 kb on + strandat 3885.034 kb on - strandat 3885.312 kb on - strand, within ECD_03685at 3885.453 kb on + strand, within ECD_03685at 3885.453 kb on + strand, within ECD_03685at 3885.456 kb on - strand, within ECD_03685at 3885.456 kb on - strand, within ECD_03685at 3885.456 kb on - strand, within ECD_03685at 3885.459 kb on - strand, within ECD_03685at 3885.459 kb on - strand, within ECD_03685at 3885.485 kb on - strand, within ECD_03685at 3885.485 kb on - strand, within ECD_03685at 3885.617 kb on + strand, within ECD_03685at 3885.618 kb on - strand, within ECD_03685at 3885.813 kb on + strandat 3885.813 kb on + strandat 3885.813 kb on + strandat 3885.813 kb on + strandat 3885.813 kb on + strandat 3885.814 kb on - strandat 3885.814 kb on - strandat 3885.815 kb on + strandat 3885.815 kb on + strandat 3885.841 kb on - strandat 3885.841 kb on - strandat 3885.859 kb on + strandat 3885.859 kb on + strandat 3885.860 kb on - strandat 3885.981 kb on + strand, within ECD_03686

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
remove
3,883,809 - +0.0
3,883,848 - +0.5
3,883,950 + -0.3
3,883,950 + +0.2
3,883,951 - +0.2
3,883,951 - +0.5
3,883,951 - +0.4
3,884,084 - ECD_03682 0.23 -0.6
3,884,180 - -1.0
3,884,207 - -0.0
3,884,335 + +0.2
3,884,335 + +0.2
3,884,362 + +0.5
3,884,363 - +0.3
3,884,442 + +0.4
3,884,442 + +0.1
3,884,442 + -0.3
3,884,443 - -0.2
3,884,443 - -1.5
3,884,443 - +0.0
3,884,445 + +0.2
3,884,445 + -0.1
3,884,446 - +0.1
3,884,446 - +0.2
3,884,446 - +0.7
3,884,451 + -0.1
3,884,451 + -0.3
3,884,452 - +0.2
3,884,452 - +0.5
3,884,452 - -1.0
3,884,452 - +0.0
3,884,452 - -0.3
3,884,452 - +0.0
3,884,453 + -0.6
3,884,454 - -0.4
3,884,455 + -0.3
3,884,456 - -0.0
3,884,456 - +0.4
3,884,490 - +0.3
3,884,520 + -0.7
3,884,521 - +0.9
3,884,523 + +0.4
3,884,523 + -0.4
3,884,523 + -0.0
3,884,610 + -0.7
3,884,611 - -0.6
3,884,647 - -0.1
3,884,659 + +0.9
3,884,659 + +0.4
3,884,660 - -0.4
3,884,674 - -0.9
3,884,682 + -0.5
3,884,683 - +0.4
3,884,760 + +1.0
3,884,760 + +0.0
3,884,761 - -1.7
3,884,813 + +0.9
3,884,813 + -1.1
3,884,827 + ECD_03684 0.14 -2.0
3,884,827 + ECD_03684 0.14 -1.8
3,884,827 + ECD_03684 0.14 +0.6
3,884,830 + ECD_03684 0.15 -0.1
3,884,834 + ECD_03684 0.17 -1.1
3,884,834 + ECD_03684 0.17 -0.6
3,884,834 + ECD_03684 0.17 -1.3
3,884,894 + ECD_03684 0.47 -1.4
3,884,895 - ECD_03684 0.47 -0.5
3,885,000 + -0.4
3,885,000 + -0.8
3,885,034 - +2.7
3,885,312 - ECD_03685 0.33 +2.7
3,885,453 + ECD_03685 0.50 +2.7
3,885,453 + ECD_03685 0.50 +2.7
3,885,456 - ECD_03685 0.51 +1.2
3,885,456 - ECD_03685 0.51 +2.7
3,885,456 - ECD_03685 0.51 +2.7
3,885,459 - ECD_03685 0.51 +2.7
3,885,459 - ECD_03685 0.51 +2.7
3,885,485 - ECD_03685 0.54 +2.7
3,885,485 - ECD_03685 0.54 +2.7
3,885,617 + ECD_03685 0.70 +2.7
3,885,618 - ECD_03685 0.70 +2.7
3,885,813 + +2.7
3,885,813 + +2.7
3,885,813 + +2.7
3,885,813 + +1.7
3,885,813 + +2.7
3,885,814 - +2.7
3,885,814 - +2.7
3,885,815 + +2.7
3,885,815 + +2.7
3,885,841 - +2.7
3,885,841 - +2.7
3,885,859 + +1.5
3,885,859 + +0.7
3,885,860 - -0.2
3,885,981 + ECD_03686 0.17 +0.9

Or see this region's nucleotide sequence