Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03322 and ECD_03323 are separated by 131 nucleotides ECD_03323 and ECD_03324 are separated by 54 nucleotides ECD_03324 and ECD_03325 are separated by 110 nucleotides
ECD_03322: ECD_03322 - putative arabinose efflux transporter, at 3,472,900 to 3,474,117
_03322
ECD_03323: ECD_03323 - UPF0118 family putative transporter, at 3,474,249 to 3,475,298
_03323
ECD_03324: ECD_03324 - 4'-phosphopantetheinyl transferase, at 3,475,353 to 3,475,940
_03324
ECD_03325: ECD_03325 - nickel/heme ABC transporter periplasmic binding protein, at 3,476,051 to 3,477,625
_03325
Position (kb)
3474
3475
3476 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3473.309 kb on - strand, within ECD_03322 at 3473.337 kb on + strand, within ECD_03322 at 3473.338 kb on - strand, within ECD_03322 at 3473.338 kb on - strand, within ECD_03322 at 3473.338 kb on - strand, within ECD_03322 at 3473.338 kb on - strand, within ECD_03322 at 3473.377 kb on - strand, within ECD_03322 at 3473.384 kb on + strand, within ECD_03322 at 3473.451 kb on - strand, within ECD_03322 at 3473.597 kb on + strand, within ECD_03322 at 3473.597 kb on + strand, within ECD_03322 at 3473.640 kb on - strand, within ECD_03322 at 3473.640 kb on - strand, within ECD_03322 at 3473.770 kb on + strand, within ECD_03322 at 3473.773 kb on + strand, within ECD_03322 at 3473.848 kb on + strand, within ECD_03322 at 3473.849 kb on - strand, within ECD_03322 at 3473.990 kb on + strand, within ECD_03322 at 3473.991 kb on - strand, within ECD_03322 at 3473.991 kb on - strand, within ECD_03322 at 3473.991 kb on - strand, within ECD_03322 at 3474.029 kb on + strand at 3474.043 kb on - strand at 3474.052 kb on + strand at 3474.053 kb on - strand at 3474.054 kb on + strand at 3474.054 kb on + strand at 3474.055 kb on - strand at 3474.089 kb on - strand at 3474.182 kb on + strand at 3474.221 kb on + strand at 3474.222 kb on - strand at 3474.345 kb on - strand at 3474.361 kb on + strand, within ECD_03323 at 3474.443 kb on + strand, within ECD_03323 at 3474.443 kb on + strand, within ECD_03323 at 3474.443 kb on + strand, within ECD_03323 at 3474.444 kb on - strand, within ECD_03323 at 3474.451 kb on + strand, within ECD_03323 at 3474.524 kb on + strand, within ECD_03323 at 3474.525 kb on - strand, within ECD_03323 at 3474.603 kb on - strand, within ECD_03323 at 3474.650 kb on + strand, within ECD_03323 at 3474.722 kb on - strand, within ECD_03323 at 3474.729 kb on - strand, within ECD_03323 at 3474.779 kb on + strand, within ECD_03323 at 3474.805 kb on + strand, within ECD_03323 at 3474.805 kb on + strand, within ECD_03323 at 3474.818 kb on + strand, within ECD_03323 at 3474.818 kb on + strand, within ECD_03323 at 3474.819 kb on - strand, within ECD_03323 at 3474.931 kb on + strand, within ECD_03323 at 3474.951 kb on + strand, within ECD_03323 at 3474.951 kb on + strand, within ECD_03323 at 3474.951 kb on + strand, within ECD_03323 at 3474.952 kb on - strand, within ECD_03323 at 3474.952 kb on - strand, within ECD_03323 at 3475.031 kb on + strand, within ECD_03323 at 3475.031 kb on + strand, within ECD_03323 at 3475.031 kb on + strand, within ECD_03323 at 3475.031 kb on + strand, within ECD_03323 at 3475.031 kb on + strand, within ECD_03323 at 3475.054 kb on + strand, within ECD_03323 at 3475.085 kb on - strand, within ECD_03323 at 3475.132 kb on + strand, within ECD_03323 at 3475.133 kb on - strand, within ECD_03323 at 3475.147 kb on + strand, within ECD_03323 at 3475.148 kb on - strand, within ECD_03323 at 3475.183 kb on + strand, within ECD_03323 at 3475.184 kb on - strand, within ECD_03323 at 3475.184 kb on - strand, within ECD_03323 at 3475.311 kb on + strand at 3475.311 kb on + strand at 3475.311 kb on + strand at 3475.311 kb on + strand at 3475.312 kb on - strand at 3475.312 kb on - strand at 3475.353 kb on - strand at 3475.356 kb on + strand at 3475.356 kb on + strand at 3475.357 kb on - strand at 3475.357 kb on - strand at 3475.510 kb on - strand, within ECD_03324 at 3475.510 kb on - strand, within ECD_03324 at 3475.510 kb on - strand, within ECD_03324 at 3475.510 kb on - strand, within ECD_03324 at 3475.811 kb on - strand, within ECD_03324 at 3475.822 kb on - strand, within ECD_03324 at 3475.886 kb on + strand at 3475.895 kb on + strand at 3475.896 kb on - strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.963 kb on + strand at 3475.964 kb on - strand at 3475.964 kb on - strand at 3475.964 kb on - strand at 3475.980 kb on + strand at 3475.981 kb on - strand at 3475.981 kb on - strand at 3475.997 kb on - strand at 3476.001 kb on - strand at 3476.012 kb on - strand at 3476.016 kb on - strand at 3476.016 kb on - strand at 3476.016 kb on - strand at 3476.016 kb on - strand at 3476.034 kb on - strand at 3476.076 kb on + strand at 3476.217 kb on - strand, within ECD_03325
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 3,473,309 - ECD_03322 0.34 +0.4 3,473,337 + ECD_03322 0.36 +0.1 3,473,338 - ECD_03322 0.36 -0.2 3,473,338 - ECD_03322 0.36 +0.3 3,473,338 - ECD_03322 0.36 +0.1 3,473,338 - ECD_03322 0.36 -0.3 3,473,377 - ECD_03322 0.39 -0.2 3,473,384 + ECD_03322 0.40 +0.7 3,473,451 - ECD_03322 0.45 +1.1 3,473,597 + ECD_03322 0.57 -0.6 3,473,597 + ECD_03322 0.57 +0.8 3,473,640 - ECD_03322 0.61 +0.4 3,473,640 - ECD_03322 0.61 +0.2 3,473,770 + ECD_03322 0.71 -0.2 3,473,773 + ECD_03322 0.72 -0.3 3,473,848 + ECD_03322 0.78 +0.4 3,473,849 - ECD_03322 0.78 -0.4 3,473,990 + ECD_03322 0.89 +0.8 3,473,991 - ECD_03322 0.90 -0.7 3,473,991 - ECD_03322 0.90 -0.3 3,473,991 - ECD_03322 0.90 -0.6 3,474,029 + -0.9 3,474,043 - -0.4 3,474,052 + -1.3 3,474,053 - +0.1 3,474,054 + -0.2 3,474,054 + +0.6 3,474,055 - -0.3 3,474,089 - -0.1 3,474,182 + -0.9 3,474,221 + -0.3 3,474,222 - +0.1 3,474,345 - -0.5 3,474,361 + ECD_03323 0.11 +0.9 3,474,443 + ECD_03323 0.18 +1.1 3,474,443 + ECD_03323 0.18 +0.6 3,474,443 + ECD_03323 0.18 +0.6 3,474,444 - ECD_03323 0.19 +0.6 3,474,451 + ECD_03323 0.19 +0.1 3,474,524 + ECD_03323 0.26 -0.2 3,474,525 - ECD_03323 0.26 +0.2 3,474,603 - ECD_03323 0.34 -0.6 3,474,650 + ECD_03323 0.38 +0.5 3,474,722 - ECD_03323 0.45 +0.1 3,474,729 - ECD_03323 0.46 -0.4 3,474,779 + ECD_03323 0.50 +0.2 3,474,805 + ECD_03323 0.53 +0.4 3,474,805 + ECD_03323 0.53 +0.2 3,474,818 + ECD_03323 0.54 +0.2 3,474,818 + ECD_03323 0.54 -0.1 3,474,819 - ECD_03323 0.54 +0.5 3,474,931 + ECD_03323 0.65 +0.0 3,474,951 + ECD_03323 0.67 -0.8 3,474,951 + ECD_03323 0.67 +0.5 3,474,951 + ECD_03323 0.67 -0.4 3,474,952 - ECD_03323 0.67 +1.5 3,474,952 - ECD_03323 0.67 +1.8 3,475,031 + ECD_03323 0.74 -0.2 3,475,031 + ECD_03323 0.74 -0.2 3,475,031 + ECD_03323 0.74 +0.8 3,475,031 + ECD_03323 0.74 +0.7 3,475,031 + ECD_03323 0.74 -0.3 3,475,054 + ECD_03323 0.77 -1.0 3,475,085 - ECD_03323 0.80 +1.1 3,475,132 + ECD_03323 0.84 -0.3 3,475,133 - ECD_03323 0.84 -0.4 3,475,147 + ECD_03323 0.86 +0.1 3,475,148 - ECD_03323 0.86 +0.4 3,475,183 + ECD_03323 0.89 +0.7 3,475,184 - ECD_03323 0.89 +0.0 3,475,184 - ECD_03323 0.89 -0.4 3,475,311 + +0.1 3,475,311 + +0.7 3,475,311 + -0.3 3,475,311 + -0.1 3,475,312 - -0.4 3,475,312 - -0.3 3,475,353 - -1.6 3,475,356 + -0.1 3,475,356 + -0.5 3,475,357 - -0.8 3,475,357 - +0.2 3,475,510 - ECD_03324 0.27 -0.4 3,475,510 - ECD_03324 0.27 +0.9 3,475,510 - ECD_03324 0.27 +0.5 3,475,510 - ECD_03324 0.27 +0.1 3,475,811 - ECD_03324 0.78 -0.2 3,475,822 - ECD_03324 0.80 -0.2 3,475,886 + -0.4 3,475,895 + +0.0 3,475,896 - -0.0 3,475,963 + +0.3 3,475,963 + -0.3 3,475,963 + +0.5 3,475,963 + +0.4 3,475,963 + +0.5 3,475,963 + +0.5 3,475,963 + -0.1 3,475,964 - -2.6 3,475,964 - +0.2 3,475,964 - +0.9 3,475,980 + -0.0 3,475,981 - -0.9 3,475,981 - +0.5 3,475,997 - -0.1 3,476,001 - +0.5 3,476,012 - +0.3 3,476,016 - +0.1 3,476,016 - -0.2 3,476,016 - -0.3 3,476,016 - +0.1 3,476,034 - -0.0 3,476,076 + +0.5 3,476,217 - ECD_03325 0.11 +0.5
Or see this region's nucleotide sequence