Strain Fitness in Escherichia coli BL21 around ECD_03323

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03322 and ECD_03323 are separated by 131 nucleotidesECD_03323 and ECD_03324 are separated by 54 nucleotidesECD_03324 and ECD_03325 are separated by 110 nucleotides ECD_03322: ECD_03322 - putative arabinose efflux transporter, at 3,472,900 to 3,474,117 _03322 ECD_03323: ECD_03323 - UPF0118 family putative transporter, at 3,474,249 to 3,475,298 _03323 ECD_03324: ECD_03324 - 4'-phosphopantetheinyl transferase, at 3,475,353 to 3,475,940 _03324 ECD_03325: ECD_03325 - nickel/heme ABC transporter periplasmic binding protein, at 3,476,051 to 3,477,625 _03325 Position (kb) 3474 3475 3476Strain fitness (log2 ratio) -2 -1 0 1 2at 3473.309 kb on - strand, within ECD_03322at 3473.337 kb on + strand, within ECD_03322at 3473.338 kb on - strand, within ECD_03322at 3473.338 kb on - strand, within ECD_03322at 3473.338 kb on - strand, within ECD_03322at 3473.338 kb on - strand, within ECD_03322at 3473.377 kb on - strand, within ECD_03322at 3473.384 kb on + strand, within ECD_03322at 3473.451 kb on - strand, within ECD_03322at 3473.597 kb on + strand, within ECD_03322at 3473.597 kb on + strand, within ECD_03322at 3473.640 kb on - strand, within ECD_03322at 3473.640 kb on - strand, within ECD_03322at 3473.770 kb on + strand, within ECD_03322at 3473.773 kb on + strand, within ECD_03322at 3473.848 kb on + strand, within ECD_03322at 3473.849 kb on - strand, within ECD_03322at 3473.990 kb on + strand, within ECD_03322at 3473.991 kb on - strand, within ECD_03322at 3473.991 kb on - strand, within ECD_03322at 3473.991 kb on - strand, within ECD_03322at 3474.029 kb on + strandat 3474.043 kb on - strandat 3474.052 kb on + strandat 3474.053 kb on - strandat 3474.054 kb on + strandat 3474.054 kb on + strandat 3474.055 kb on - strandat 3474.089 kb on - strandat 3474.182 kb on + strandat 3474.221 kb on + strandat 3474.222 kb on - strandat 3474.345 kb on - strandat 3474.361 kb on + strand, within ECD_03323at 3474.443 kb on + strand, within ECD_03323at 3474.443 kb on + strand, within ECD_03323at 3474.443 kb on + strand, within ECD_03323at 3474.444 kb on - strand, within ECD_03323at 3474.451 kb on + strand, within ECD_03323at 3474.524 kb on + strand, within ECD_03323at 3474.525 kb on - strand, within ECD_03323at 3474.603 kb on - strand, within ECD_03323at 3474.650 kb on + strand, within ECD_03323at 3474.722 kb on - strand, within ECD_03323at 3474.729 kb on - strand, within ECD_03323at 3474.779 kb on + strand, within ECD_03323at 3474.805 kb on + strand, within ECD_03323at 3474.805 kb on + strand, within ECD_03323at 3474.818 kb on + strand, within ECD_03323at 3474.818 kb on + strand, within ECD_03323at 3474.819 kb on - strand, within ECD_03323at 3474.931 kb on + strand, within ECD_03323at 3474.951 kb on + strand, within ECD_03323at 3474.951 kb on + strand, within ECD_03323at 3474.951 kb on + strand, within ECD_03323at 3474.952 kb on - strand, within ECD_03323at 3474.952 kb on - strand, within ECD_03323at 3475.031 kb on + strand, within ECD_03323at 3475.031 kb on + strand, within ECD_03323at 3475.031 kb on + strand, within ECD_03323at 3475.031 kb on + strand, within ECD_03323at 3475.031 kb on + strand, within ECD_03323at 3475.054 kb on + strand, within ECD_03323at 3475.085 kb on - strand, within ECD_03323at 3475.132 kb on + strand, within ECD_03323at 3475.133 kb on - strand, within ECD_03323at 3475.147 kb on + strand, within ECD_03323at 3475.148 kb on - strand, within ECD_03323at 3475.183 kb on + strand, within ECD_03323at 3475.184 kb on - strand, within ECD_03323at 3475.184 kb on - strand, within ECD_03323at 3475.311 kb on + strandat 3475.311 kb on + strandat 3475.311 kb on + strandat 3475.311 kb on + strandat 3475.312 kb on - strandat 3475.312 kb on - strandat 3475.353 kb on - strandat 3475.356 kb on + strandat 3475.356 kb on + strandat 3475.357 kb on - strandat 3475.357 kb on - strandat 3475.510 kb on - strand, within ECD_03324at 3475.510 kb on - strand, within ECD_03324at 3475.510 kb on - strand, within ECD_03324at 3475.510 kb on - strand, within ECD_03324at 3475.811 kb on - strand, within ECD_03324at 3475.822 kb on - strand, within ECD_03324at 3475.886 kb on + strandat 3475.895 kb on + strandat 3475.896 kb on - strandat 3475.963 kb on + strandat 3475.963 kb on + strandat 3475.963 kb on + strandat 3475.963 kb on + strandat 3475.963 kb on + strandat 3475.963 kb on + strandat 3475.963 kb on + strandat 3475.964 kb on - strandat 3475.964 kb on - strandat 3475.964 kb on - strandat 3475.980 kb on + strandat 3475.981 kb on - strandat 3475.981 kb on - strandat 3475.997 kb on - strandat 3476.001 kb on - strandat 3476.012 kb on - strandat 3476.016 kb on - strandat 3476.016 kb on - strandat 3476.016 kb on - strandat 3476.016 kb on - strandat 3476.034 kb on - strandat 3476.076 kb on + strandat 3476.217 kb on - strand, within ECD_03325

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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3,473,309 - ECD_03322 0.34 +0.4
3,473,337 + ECD_03322 0.36 +0.1
3,473,338 - ECD_03322 0.36 -0.2
3,473,338 - ECD_03322 0.36 +0.3
3,473,338 - ECD_03322 0.36 +0.1
3,473,338 - ECD_03322 0.36 -0.3
3,473,377 - ECD_03322 0.39 -0.2
3,473,384 + ECD_03322 0.40 +0.7
3,473,451 - ECD_03322 0.45 +1.1
3,473,597 + ECD_03322 0.57 -0.6
3,473,597 + ECD_03322 0.57 +0.8
3,473,640 - ECD_03322 0.61 +0.4
3,473,640 - ECD_03322 0.61 +0.2
3,473,770 + ECD_03322 0.71 -0.2
3,473,773 + ECD_03322 0.72 -0.3
3,473,848 + ECD_03322 0.78 +0.4
3,473,849 - ECD_03322 0.78 -0.4
3,473,990 + ECD_03322 0.89 +0.8
3,473,991 - ECD_03322 0.90 -0.7
3,473,991 - ECD_03322 0.90 -0.3
3,473,991 - ECD_03322 0.90 -0.6
3,474,029 + -0.9
3,474,043 - -0.4
3,474,052 + -1.3
3,474,053 - +0.1
3,474,054 + -0.2
3,474,054 + +0.6
3,474,055 - -0.3
3,474,089 - -0.1
3,474,182 + -0.9
3,474,221 + -0.3
3,474,222 - +0.1
3,474,345 - -0.5
3,474,361 + ECD_03323 0.11 +0.9
3,474,443 + ECD_03323 0.18 +1.1
3,474,443 + ECD_03323 0.18 +0.6
3,474,443 + ECD_03323 0.18 +0.6
3,474,444 - ECD_03323 0.19 +0.6
3,474,451 + ECD_03323 0.19 +0.1
3,474,524 + ECD_03323 0.26 -0.2
3,474,525 - ECD_03323 0.26 +0.2
3,474,603 - ECD_03323 0.34 -0.6
3,474,650 + ECD_03323 0.38 +0.5
3,474,722 - ECD_03323 0.45 +0.1
3,474,729 - ECD_03323 0.46 -0.4
3,474,779 + ECD_03323 0.50 +0.2
3,474,805 + ECD_03323 0.53 +0.4
3,474,805 + ECD_03323 0.53 +0.2
3,474,818 + ECD_03323 0.54 +0.2
3,474,818 + ECD_03323 0.54 -0.1
3,474,819 - ECD_03323 0.54 +0.5
3,474,931 + ECD_03323 0.65 +0.0
3,474,951 + ECD_03323 0.67 -0.8
3,474,951 + ECD_03323 0.67 +0.5
3,474,951 + ECD_03323 0.67 -0.4
3,474,952 - ECD_03323 0.67 +1.5
3,474,952 - ECD_03323 0.67 +1.8
3,475,031 + ECD_03323 0.74 -0.2
3,475,031 + ECD_03323 0.74 -0.2
3,475,031 + ECD_03323 0.74 +0.8
3,475,031 + ECD_03323 0.74 +0.7
3,475,031 + ECD_03323 0.74 -0.3
3,475,054 + ECD_03323 0.77 -1.0
3,475,085 - ECD_03323 0.80 +1.1
3,475,132 + ECD_03323 0.84 -0.3
3,475,133 - ECD_03323 0.84 -0.4
3,475,147 + ECD_03323 0.86 +0.1
3,475,148 - ECD_03323 0.86 +0.4
3,475,183 + ECD_03323 0.89 +0.7
3,475,184 - ECD_03323 0.89 +0.0
3,475,184 - ECD_03323 0.89 -0.4
3,475,311 + +0.1
3,475,311 + +0.7
3,475,311 + -0.3
3,475,311 + -0.1
3,475,312 - -0.4
3,475,312 - -0.3
3,475,353 - -1.6
3,475,356 + -0.1
3,475,356 + -0.5
3,475,357 - -0.8
3,475,357 - +0.2
3,475,510 - ECD_03324 0.27 -0.4
3,475,510 - ECD_03324 0.27 +0.9
3,475,510 - ECD_03324 0.27 +0.5
3,475,510 - ECD_03324 0.27 +0.1
3,475,811 - ECD_03324 0.78 -0.2
3,475,822 - ECD_03324 0.80 -0.2
3,475,886 + -0.4
3,475,895 + +0.0
3,475,896 - -0.0
3,475,963 + +0.3
3,475,963 + -0.3
3,475,963 + +0.5
3,475,963 + +0.4
3,475,963 + +0.5
3,475,963 + +0.5
3,475,963 + -0.1
3,475,964 - -2.6
3,475,964 - +0.2
3,475,964 - +0.9
3,475,980 + -0.0
3,475,981 - -0.9
3,475,981 - +0.5
3,475,997 - -0.1
3,476,001 - +0.5
3,476,012 - +0.3
3,476,016 - +0.1
3,476,016 - -0.2
3,476,016 - -0.3
3,476,016 - +0.1
3,476,034 - -0.0
3,476,076 + +0.5
3,476,217 - ECD_03325 0.11 +0.5

Or see this region's nucleotide sequence