Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03293 and ECD_03294 overlap by 1 nucleotides ECD_03294 and ECD_03295 are separated by 449 nucleotides ECD_03295 and ECD_03296 are separated by 37 nucleotides
ECD_03293: ECD_03293 - putative Hcp1 family polymorphic toxin protein; putative colicin-like DNase/tRNase activity, at 3,445,012 to 3,446,190
_03293
ECD_03294: ECD_03294 - hypothetical protein, at 3,446,190 to 3,446,681
_03294
ECD_03295: ECD_03295 - stable heat shock chaperone, at 3,447,131 to 3,447,415
_03295
ECD_03296: ECD_03296 - gamma-glutamyltranspeptidase, at 3,447,453 to 3,449,195
_03296
Position (kb) 3446
3447 Strain fitness (log2 ratio) -1
0
1
2 at 3447.202 kb on + strand, within ECD_03295 at 3447.203 kb on - strand, within ECD_03295 at 3447.207 kb on + strand, within ECD_03295 at 3447.234 kb on - strand, within ECD_03295 at 3447.307 kb on + strand, within ECD_03295 at 3447.380 kb on + strand, within ECD_03295 at 3447.421 kb on + strand at 3447.454 kb on + strand at 3447.539 kb on + strand at 3447.600 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 3,447,202 + ECD_03295 0.25 -0.2 3,447,203 - ECD_03295 0.25 +0.2 3,447,207 + ECD_03295 0.27 -0.4 3,447,234 - ECD_03295 0.36 +0.3 3,447,307 + ECD_03295 0.62 -0.1 3,447,380 + ECD_03295 0.87 -0.3 3,447,421 + +1.8 3,447,454 + +0.3 3,447,539 + -0.9 3,447,600 - -0.9
Or see this region's nucleotide sequence