Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03004 and ECD_03005 are separated by 166 nucleotides ECD_03005 and ECD_03006 are separated by 38 nucleotides ECD_03006 and ECD_03007 overlap by 11 nucleotides
ECD_03004: ECD_03004 - tagatose 6-phosphate aldolase 1, kbaY subunit, at 3,151,641 to 3,152,501
_03004
ECD_03005: ECD_03005 - N-acetylgalactosamine-specific enzyme IIB component of PTS, at 3,152,668 to 3,153,144
_03005
ECD_03006: ECD_03006 - N-acetylgalactosamine-specific enzyme IIC component of PTS, at 3,153,183 to 3,153,986
_03006
ECD_03007: ECD_03007 - N-acetylgalactosamine-specific enzyme IID component of PTS, at 3,153,976 to 3,154,767
_03007
Position (kb)
3152
3153
3154 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3151.710 kb on - strand at 3151.802 kb on + strand, within ECD_03004 at 3151.827 kb on + strand, within ECD_03004 at 3151.828 kb on - strand, within ECD_03004 at 3151.857 kb on + strand, within ECD_03004 at 3151.857 kb on + strand, within ECD_03004 at 3151.857 kb on + strand, within ECD_03004 at 3151.858 kb on - strand, within ECD_03004 at 3151.858 kb on - strand, within ECD_03004 at 3151.908 kb on - strand, within ECD_03004 at 3152.185 kb on + strand, within ECD_03004 at 3152.186 kb on - strand, within ECD_03004 at 3152.260 kb on + strand, within ECD_03004 at 3152.260 kb on + strand, within ECD_03004 at 3152.303 kb on + strand, within ECD_03004 at 3152.813 kb on + strand, within ECD_03005 at 3152.860 kb on - strand, within ECD_03005 at 3153.660 kb on - strand, within ECD_03006 at 3153.660 kb on - strand, within ECD_03006 at 3153.663 kb on + strand, within ECD_03006 at 3153.663 kb on + strand, within ECD_03006 at 3153.798 kb on + strand, within ECD_03006 at 3153.798 kb on + strand, within ECD_03006 at 3153.798 kb on + strand, within ECD_03006 at 3153.798 kb on + strand, within ECD_03006 at 3153.798 kb on + strand, within ECD_03006 at 3153.798 kb on + strand, within ECD_03006 at 3153.798 kb on + strand, within ECD_03006 at 3153.799 kb on - strand, within ECD_03006 at 3153.799 kb on - strand, within ECD_03006 at 3153.799 kb on - strand, within ECD_03006 at 3153.799 kb on - strand, within ECD_03006 at 3153.800 kb on + strand, within ECD_03006 at 3153.801 kb on - strand, within ECD_03006 at 3153.801 kb on - strand, within ECD_03006 at 3153.801 kb on - strand, within ECD_03006 at 3153.803 kb on - strand, within ECD_03006 at 3153.808 kb on - strand, within ECD_03006 at 3153.838 kb on - strand, within ECD_03006 at 3153.894 kb on + strand, within ECD_03006 at 3153.895 kb on - strand, within ECD_03006 at 3153.895 kb on - strand, within ECD_03006 at 3153.969 kb on + strand at 3153.969 kb on + strand at 3154.002 kb on + strand at 3154.111 kb on + strand, within ECD_03007 at 3154.112 kb on - strand, within ECD_03007 at 3154.113 kb on + strand, within ECD_03007 at 3154.113 kb on + strand, within ECD_03007 at 3154.114 kb on - strand, within ECD_03007 at 3154.114 kb on - strand, within ECD_03007
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 3,151,710 - +0.3 3,151,802 + ECD_03004 0.19 +0.2 3,151,827 + ECD_03004 0.22 +0.1 3,151,828 - ECD_03004 0.22 -1.1 3,151,857 + ECD_03004 0.25 -0.5 3,151,857 + ECD_03004 0.25 -0.7 3,151,857 + ECD_03004 0.25 -2.1 3,151,858 - ECD_03004 0.25 -0.0 3,151,858 - ECD_03004 0.25 -0.5 3,151,908 - ECD_03004 0.31 -0.2 3,152,185 + ECD_03004 0.63 -0.4 3,152,186 - ECD_03004 0.63 -0.0 3,152,260 + ECD_03004 0.72 +0.3 3,152,260 + ECD_03004 0.72 -0.0 3,152,303 + ECD_03004 0.77 +0.4 3,152,813 + ECD_03005 0.30 -1.3 3,152,860 - ECD_03005 0.40 -2.0 3,153,660 - ECD_03006 0.59 -0.7 3,153,660 - ECD_03006 0.59 -0.5 3,153,663 + ECD_03006 0.60 -0.2 3,153,663 + ECD_03006 0.60 +0.3 3,153,798 + ECD_03006 0.76 +0.9 3,153,798 + ECD_03006 0.76 -1.1 3,153,798 + ECD_03006 0.76 +0.5 3,153,798 + ECD_03006 0.76 -1.0 3,153,798 + ECD_03006 0.76 +0.7 3,153,798 + ECD_03006 0.76 +1.0 3,153,798 + ECD_03006 0.76 -0.1 3,153,799 - ECD_03006 0.77 +1.5 3,153,799 - ECD_03006 0.77 +0.4 3,153,799 - ECD_03006 0.77 +1.9 3,153,799 - ECD_03006 0.77 +0.3 3,153,800 + ECD_03006 0.77 +0.7 3,153,801 - ECD_03006 0.77 -0.1 3,153,801 - ECD_03006 0.77 -0.2 3,153,801 - ECD_03006 0.77 -0.6 3,153,803 - ECD_03006 0.77 +1.0 3,153,808 - ECD_03006 0.78 -1.2 3,153,838 - ECD_03006 0.81 +0.5 3,153,894 + ECD_03006 0.88 -0.1 3,153,895 - ECD_03006 0.89 +0.3 3,153,895 - ECD_03006 0.89 +0.1 3,153,969 + -0.0 3,153,969 + +0.8 3,154,002 + -0.2 3,154,111 + ECD_03007 0.17 -0.6 3,154,112 - ECD_03007 0.17 +1.0 3,154,113 + ECD_03007 0.17 +0.3 3,154,113 + ECD_03007 0.17 +0.8 3,154,114 - ECD_03007 0.17 +0.8 3,154,114 - ECD_03007 0.17 -1.2
Or see this region's nucleotide sequence