Strain Fitness in Escherichia coli BL21 around ECD_03005

Experiment: Bas18

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03004 and ECD_03005 are separated by 166 nucleotidesECD_03005 and ECD_03006 are separated by 38 nucleotidesECD_03006 and ECD_03007 overlap by 11 nucleotides ECD_03004: ECD_03004 - tagatose 6-phosphate aldolase 1, kbaY subunit, at 3,151,641 to 3,152,501 _03004 ECD_03005: ECD_03005 - N-acetylgalactosamine-specific enzyme IIB component of PTS, at 3,152,668 to 3,153,144 _03005 ECD_03006: ECD_03006 - N-acetylgalactosamine-specific enzyme IIC component of PTS, at 3,153,183 to 3,153,986 _03006 ECD_03007: ECD_03007 - N-acetylgalactosamine-specific enzyme IID component of PTS, at 3,153,976 to 3,154,767 _03007 Position (kb) 3152 3153 3154Strain fitness (log2 ratio) -2 -1 0 1 2at 3151.710 kb on - strandat 3151.802 kb on + strand, within ECD_03004at 3151.827 kb on + strand, within ECD_03004at 3151.828 kb on - strand, within ECD_03004at 3151.857 kb on + strand, within ECD_03004at 3151.857 kb on + strand, within ECD_03004at 3151.857 kb on + strand, within ECD_03004at 3151.858 kb on - strand, within ECD_03004at 3151.858 kb on - strand, within ECD_03004at 3151.908 kb on - strand, within ECD_03004at 3152.185 kb on + strand, within ECD_03004at 3152.186 kb on - strand, within ECD_03004at 3152.260 kb on + strand, within ECD_03004at 3152.260 kb on + strand, within ECD_03004at 3152.303 kb on + strand, within ECD_03004at 3152.813 kb on + strand, within ECD_03005at 3152.860 kb on - strand, within ECD_03005at 3153.660 kb on - strand, within ECD_03006at 3153.660 kb on - strand, within ECD_03006at 3153.663 kb on + strand, within ECD_03006at 3153.663 kb on + strand, within ECD_03006at 3153.798 kb on + strand, within ECD_03006at 3153.798 kb on + strand, within ECD_03006at 3153.798 kb on + strand, within ECD_03006at 3153.798 kb on + strand, within ECD_03006at 3153.798 kb on + strand, within ECD_03006at 3153.798 kb on + strand, within ECD_03006at 3153.798 kb on + strand, within ECD_03006at 3153.799 kb on - strand, within ECD_03006at 3153.799 kb on - strand, within ECD_03006at 3153.799 kb on - strand, within ECD_03006at 3153.799 kb on - strand, within ECD_03006at 3153.800 kb on + strand, within ECD_03006at 3153.801 kb on - strand, within ECD_03006at 3153.801 kb on - strand, within ECD_03006at 3153.801 kb on - strand, within ECD_03006at 3153.803 kb on - strand, within ECD_03006at 3153.808 kb on - strand, within ECD_03006at 3153.838 kb on - strand, within ECD_03006at 3153.894 kb on + strand, within ECD_03006at 3153.895 kb on - strand, within ECD_03006at 3153.895 kb on - strand, within ECD_03006at 3153.969 kb on + strandat 3153.969 kb on + strandat 3154.002 kb on + strandat 3154.111 kb on + strand, within ECD_03007at 3154.112 kb on - strand, within ECD_03007at 3154.113 kb on + strand, within ECD_03007at 3154.113 kb on + strand, within ECD_03007at 3154.114 kb on - strand, within ECD_03007at 3154.114 kb on - strand, within ECD_03007

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
remove
3,151,710 - +0.3
3,151,802 + ECD_03004 0.19 +0.2
3,151,827 + ECD_03004 0.22 +0.1
3,151,828 - ECD_03004 0.22 -1.1
3,151,857 + ECD_03004 0.25 -0.5
3,151,857 + ECD_03004 0.25 -0.7
3,151,857 + ECD_03004 0.25 -2.1
3,151,858 - ECD_03004 0.25 -0.0
3,151,858 - ECD_03004 0.25 -0.5
3,151,908 - ECD_03004 0.31 -0.2
3,152,185 + ECD_03004 0.63 -0.4
3,152,186 - ECD_03004 0.63 -0.0
3,152,260 + ECD_03004 0.72 +0.3
3,152,260 + ECD_03004 0.72 -0.0
3,152,303 + ECD_03004 0.77 +0.4
3,152,813 + ECD_03005 0.30 -1.3
3,152,860 - ECD_03005 0.40 -2.0
3,153,660 - ECD_03006 0.59 -0.7
3,153,660 - ECD_03006 0.59 -0.5
3,153,663 + ECD_03006 0.60 -0.2
3,153,663 + ECD_03006 0.60 +0.3
3,153,798 + ECD_03006 0.76 +0.9
3,153,798 + ECD_03006 0.76 -1.1
3,153,798 + ECD_03006 0.76 +0.5
3,153,798 + ECD_03006 0.76 -1.0
3,153,798 + ECD_03006 0.76 +0.7
3,153,798 + ECD_03006 0.76 +1.0
3,153,798 + ECD_03006 0.76 -0.1
3,153,799 - ECD_03006 0.77 +1.5
3,153,799 - ECD_03006 0.77 +0.4
3,153,799 - ECD_03006 0.77 +1.9
3,153,799 - ECD_03006 0.77 +0.3
3,153,800 + ECD_03006 0.77 +0.7
3,153,801 - ECD_03006 0.77 -0.1
3,153,801 - ECD_03006 0.77 -0.2
3,153,801 - ECD_03006 0.77 -0.6
3,153,803 - ECD_03006 0.77 +1.0
3,153,808 - ECD_03006 0.78 -1.2
3,153,838 - ECD_03006 0.81 +0.5
3,153,894 + ECD_03006 0.88 -0.1
3,153,895 - ECD_03006 0.89 +0.3
3,153,895 - ECD_03006 0.89 +0.1
3,153,969 + -0.0
3,153,969 + +0.8
3,154,002 + -0.2
3,154,111 + ECD_03007 0.17 -0.6
3,154,112 - ECD_03007 0.17 +1.0
3,154,113 + ECD_03007 0.17 +0.3
3,154,113 + ECD_03007 0.17 +0.8
3,154,114 - ECD_03007 0.17 +0.8
3,154,114 - ECD_03007 0.17 -1.2

Or see this region's nucleotide sequence