Strain Fitness in Escherichia coli BL21 around ECD_02878

Experiment: Bas18

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_02876 and ECD_02877 are separated by 39 nucleotidesECD_02877 and ECD_02878 are separated by 190 nucleotidesECD_02878 and ECD_02879 are separated by 271 nucleotidesECD_02879 and ECD_02880 are separated by 6 nucleotides ECD_02876: ECD_02876 - L-glyceraldehyde 3-phosphate reductase, at 3,015,334 to 3,016,374 _02876 ECD_02877: ECD_02877 - UPF0114 family putative inner membrane protein, at 3,016,414 to 3,016,908 _02877 ECD_02878: ECD_02878 - putative oxidoreductase, at 3,017,099 to 3,017,983 _02878 ECD_02879: ECD_02879 - membrane spanning protein in TonB-ExbB-ExbD complex, at 3,018,255 to 3,018,680 _02879 ECD_02880: ECD_02880 - membrane spanning protein in TonB-ExbB-ExbD complex, at 3,018,687 to 3,019,421 _02880 Position (kb) 3017 3018Strain fitness (log2 ratio) -2 -1 0 1at 3016.140 kb on - strand, within ECD_02876at 3016.256 kb on + strand, within ECD_02876at 3016.256 kb on + strand, within ECD_02876at 3016.293 kb on + strandat 3016.293 kb on + strandat 3016.294 kb on - strandat 3016.381 kb on - strandat 3016.423 kb on - strandat 3016.445 kb on + strandat 3016.445 kb on + strandat 3016.494 kb on - strand, within ECD_02877at 3016.494 kb on - strand, within ECD_02877at 3016.494 kb on - strand, within ECD_02877at 3016.546 kb on + strand, within ECD_02877at 3016.677 kb on - strand, within ECD_02877at 3016.776 kb on + strand, within ECD_02877at 3016.777 kb on - strand, within ECD_02877at 3016.795 kb on - strand, within ECD_02877at 3016.795 kb on - strand, within ECD_02877at 3016.829 kb on - strand, within ECD_02877at 3016.851 kb on - strand, within ECD_02877at 3016.851 kb on - strand, within ECD_02877at 3016.851 kb on - strand, within ECD_02877at 3016.880 kb on + strandat 3016.880 kb on + strandat 3016.880 kb on + strandat 3016.880 kb on + strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.881 kb on - strandat 3016.908 kb on + strandat 3016.908 kb on + strandat 3016.909 kb on - strandat 3016.909 kb on - strandat 3016.909 kb on - strandat 3016.909 kb on - strandat 3016.909 kb on - strandat 3016.942 kb on + strandat 3016.942 kb on + strandat 3016.942 kb on + strandat 3016.942 kb on + strandat 3016.942 kb on + strandat 3016.943 kb on - strandat 3016.943 kb on - strandat 3016.943 kb on - strandat 3016.984 kb on + strandat 3016.984 kb on + strandat 3016.984 kb on + strandat 3016.985 kb on - strandat 3016.985 kb on - strandat 3016.985 kb on - strandat 3016.985 kb on - strandat 3016.985 kb on - strandat 3016.987 kb on - strandat 3016.987 kb on - strandat 3016.987 kb on - strandat 3016.987 kb on - strandat 3016.991 kb on + strandat 3017.006 kb on + strandat 3017.019 kb on + strandat 3017.040 kb on + strandat 3017.041 kb on - strandat 3017.061 kb on + strandat 3017.132 kb on + strandat 3017.133 kb on - strandat 3017.133 kb on - strandat 3017.219 kb on + strand, within ECD_02878at 3017.219 kb on + strand, within ECD_02878at 3017.219 kb on + strand, within ECD_02878at 3017.220 kb on - strand, within ECD_02878at 3017.220 kb on - strand, within ECD_02878at 3017.248 kb on + strand, within ECD_02878at 3017.248 kb on + strand, within ECD_02878at 3017.336 kb on + strand, within ECD_02878at 3017.337 kb on - strand, within ECD_02878at 3017.491 kb on + strand, within ECD_02878at 3017.638 kb on + strand, within ECD_02878at 3017.638 kb on + strand, within ECD_02878at 3017.638 kb on + strand, within ECD_02878at 3017.639 kb on - strand, within ECD_02878at 3017.639 kb on - strand, within ECD_02878at 3017.639 kb on - strand, within ECD_02878at 3017.639 kb on - strand, within ECD_02878at 3017.666 kb on + strand, within ECD_02878at 3017.685 kb on + strand, within ECD_02878at 3017.693 kb on + strand, within ECD_02878at 3017.694 kb on - strand, within ECD_02878at 3017.761 kb on + strand, within ECD_02878at 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.901 kb on + strandat 3017.902 kb on - strandat 3017.902 kb on - strandat 3017.902 kb on - strandat 3017.902 kb on - strandat 3017.903 kb on + strandat 3017.903 kb on + strandat 3017.903 kb on + strandat 3017.904 kb on - strandat 3017.904 kb on - strandat 3017.904 kb on - strandat 3017.904 kb on - strandat 3017.909 kb on + strandat 3017.909 kb on + strandat 3017.909 kb on + strandat 3017.910 kb on - strandat 3017.933 kb on + strandat 3017.933 kb on + strandat 3017.933 kb on + strandat 3017.933 kb on + strandat 3017.934 kb on - strandat 3017.934 kb on - strandat 3017.977 kb on - strandat 3017.977 kb on - strandat 3018.035 kb on - strandat 3018.114 kb on + strandat 3018.143 kb on + strandat 3018.144 kb on - strandat 3018.234 kb on - strandat 3018.256 kb on + strandat 3018.257 kb on - strandat 3018.257 kb on - strandat 3018.291 kb on + strandat 3018.292 kb on - strandat 3018.292 kb on - strandat 3018.328 kb on - strand, within ECD_02879at 3018.487 kb on + strand, within ECD_02879at 3018.487 kb on + strand, within ECD_02879at 3018.487 kb on + strand, within ECD_02879at 3018.487 kb on + strand, within ECD_02879at 3018.488 kb on - strand, within ECD_02879at 3018.525 kb on - strand, within ECD_02879at 3018.579 kb on - strand, within ECD_02879at 3018.584 kb on + strand, within ECD_02879at 3018.629 kb on + strand, within ECD_02879at 3018.630 kb on - strand, within ECD_02879at 3018.700 kb on - strandat 3018.775 kb on - strand, within ECD_02880at 3018.775 kb on - strand, within ECD_02880at 3018.775 kb on - strand, within ECD_02880at 3018.775 kb on - strand, within ECD_02880at 3018.831 kb on + strand, within ECD_02880at 3018.831 kb on + strand, within ECD_02880at 3018.832 kb on - strand, within ECD_02880at 3018.832 kb on - strand, within ECD_02880at 3018.832 kb on - strand, within ECD_02880at 3018.832 kb on - strand, within ECD_02880at 3018.832 kb on - strand, within ECD_02880at 3018.832 kb on - strand, within ECD_02880at 3018.832 kb on - strand, within ECD_02880at 3018.832 kb on - strand, within ECD_02880at 3018.838 kb on + strand, within ECD_02880at 3018.838 kb on + strand, within ECD_02880at 3018.838 kb on + strand, within ECD_02880at 3018.838 kb on + strand, within ECD_02880at 3018.838 kb on + strand, within ECD_02880at 3018.838 kb on + strand, within ECD_02880at 3018.838 kb on + strand, within ECD_02880at 3018.839 kb on - strand, within ECD_02880at 3018.839 kb on - strand, within ECD_02880at 3018.839 kb on - strand, within ECD_02880at 3018.885 kb on + strand, within ECD_02880at 3018.953 kb on + strand, within ECD_02880

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
remove
3,016,140 - ECD_02876 0.77 +1.0
3,016,256 + ECD_02876 0.89 -1.4
3,016,256 + ECD_02876 0.89 -0.5
3,016,293 + +0.3
3,016,293 + +1.0
3,016,294 - -0.3
3,016,381 - +0.6
3,016,423 - -0.5
3,016,445 + +0.5
3,016,445 + -0.1
3,016,494 - ECD_02877 0.16 +0.3
3,016,494 - ECD_02877 0.16 +1.2
3,016,494 - ECD_02877 0.16 -1.5
3,016,546 + ECD_02877 0.27 -1.0
3,016,677 - ECD_02877 0.53 +0.1
3,016,776 + ECD_02877 0.73 +0.0
3,016,777 - ECD_02877 0.73 +0.3
3,016,795 - ECD_02877 0.77 +0.2
3,016,795 - ECD_02877 0.77 -0.1
3,016,829 - ECD_02877 0.84 +0.5
3,016,851 - ECD_02877 0.88 +0.8
3,016,851 - ECD_02877 0.88 +0.3
3,016,851 - ECD_02877 0.88 +0.3
3,016,880 + +1.2
3,016,880 + +0.6
3,016,880 + +1.2
3,016,880 + +0.1
3,016,881 - +0.6
3,016,881 - -1.0
3,016,881 - +0.3
3,016,881 - -0.4
3,016,881 - -0.3
3,016,881 - +0.4
3,016,881 - -0.3
3,016,881 - -1.6
3,016,881 - +0.2
3,016,881 - +1.7
3,016,881 - -0.6
3,016,881 - -0.3
3,016,908 + -0.6
3,016,908 + -0.4
3,016,909 - -0.1
3,016,909 - +0.0
3,016,909 - -0.1
3,016,909 - +0.4
3,016,909 - +0.6
3,016,942 + +0.1
3,016,942 + -0.3
3,016,942 + -2.1
3,016,942 + -0.0
3,016,942 + +0.3
3,016,943 - -0.3
3,016,943 - +0.3
3,016,943 - -0.4
3,016,984 + +1.5
3,016,984 + +0.4
3,016,984 + -0.3
3,016,985 - -0.3
3,016,985 - -0.1
3,016,985 - -0.3
3,016,985 - -0.1
3,016,985 - -0.6
3,016,987 - +0.9
3,016,987 - -0.1
3,016,987 - +0.6
3,016,987 - -0.0
3,016,991 + -0.3
3,017,006 + +0.6
3,017,019 + -0.0
3,017,040 + -0.6
3,017,041 - +0.3
3,017,061 + -0.0
3,017,132 + -0.2
3,017,133 - +0.5
3,017,133 - -1.1
3,017,219 + ECD_02878 0.14 -0.7
3,017,219 + ECD_02878 0.14 -0.1
3,017,219 + ECD_02878 0.14 -1.4
3,017,220 - ECD_02878 0.14 +1.2
3,017,220 - ECD_02878 0.14 +0.6
3,017,248 + ECD_02878 0.17 -1.0
3,017,248 + ECD_02878 0.17 -0.4
3,017,336 + ECD_02878 0.27 -0.8
3,017,337 - ECD_02878 0.27 -0.7
3,017,491 + ECD_02878 0.44 +1.0
3,017,638 + ECD_02878 0.61 +0.7
3,017,638 + ECD_02878 0.61 -1.3
3,017,638 + ECD_02878 0.61 +0.3
3,017,639 - ECD_02878 0.61 -0.8
3,017,639 - ECD_02878 0.61 -0.6
3,017,639 - ECD_02878 0.61 -0.6
3,017,639 - ECD_02878 0.61 +0.3
3,017,666 + ECD_02878 0.64 -0.8
3,017,685 + ECD_02878 0.66 +1.1
3,017,693 + ECD_02878 0.67 -0.0
3,017,694 - ECD_02878 0.67 +0.1
3,017,761 + ECD_02878 0.75 -0.3
3,017,901 + +0.3
3,017,901 + -0.6
3,017,901 + +0.2
3,017,901 + -0.1
3,017,901 + -0.4
3,017,901 + +0.1
3,017,901 + -0.5
3,017,901 + -0.2
3,017,901 + -0.1
3,017,901 + +0.9
3,017,902 - +0.7
3,017,902 - +1.5
3,017,902 - -0.9
3,017,902 - +0.2
3,017,903 + +1.7
3,017,903 + -1.7
3,017,903 + -0.0
3,017,904 - +1.0
3,017,904 - +1.0
3,017,904 - +0.8
3,017,904 - -0.4
3,017,909 + +0.4
3,017,909 + -0.3
3,017,909 + -0.4
3,017,910 - -0.5
3,017,933 + +0.9
3,017,933 + -0.8
3,017,933 + +1.0
3,017,933 + -1.0
3,017,934 - -0.3
3,017,934 - -0.0
3,017,977 - +1.5
3,017,977 - +0.7
3,018,035 - -0.3
3,018,114 + -0.4
3,018,143 + +0.5
3,018,144 - -0.1
3,018,234 - +0.6
3,018,256 + +0.9
3,018,257 - -0.3
3,018,257 - +0.4
3,018,291 + +0.8
3,018,292 - -0.9
3,018,292 - +0.2
3,018,328 - ECD_02879 0.17 -0.0
3,018,487 + ECD_02879 0.54 +0.9
3,018,487 + ECD_02879 0.54 -0.3
3,018,487 + ECD_02879 0.54 +0.8
3,018,487 + ECD_02879 0.54 +0.6
3,018,488 - ECD_02879 0.55 -0.5
3,018,525 - ECD_02879 0.63 -0.2
3,018,579 - ECD_02879 0.76 -0.2
3,018,584 + ECD_02879 0.77 +0.1
3,018,629 + ECD_02879 0.88 -0.3
3,018,630 - ECD_02879 0.88 -0.2
3,018,700 - -1.7
3,018,775 - ECD_02880 0.12 -0.7
3,018,775 - ECD_02880 0.12 -0.6
3,018,775 - ECD_02880 0.12 -1.7
3,018,775 - ECD_02880 0.12 +0.3
3,018,831 + ECD_02880 0.20 -1.0
3,018,831 + ECD_02880 0.20 +0.5
3,018,832 - ECD_02880 0.20 -1.0
3,018,832 - ECD_02880 0.20 +0.1
3,018,832 - ECD_02880 0.20 +0.9
3,018,832 - ECD_02880 0.20 +0.4
3,018,832 - ECD_02880 0.20 -0.2
3,018,832 - ECD_02880 0.20 -1.4
3,018,832 - ECD_02880 0.20 +0.9
3,018,832 - ECD_02880 0.20 -0.1
3,018,838 + ECD_02880 0.21 -0.2
3,018,838 + ECD_02880 0.21 -0.0
3,018,838 + ECD_02880 0.21 -1.0
3,018,838 + ECD_02880 0.21 +0.5
3,018,838 + ECD_02880 0.21 -0.6
3,018,838 + ECD_02880 0.21 -0.4
3,018,838 + ECD_02880 0.21 -0.6
3,018,839 - ECD_02880 0.21 -1.2
3,018,839 - ECD_02880 0.21 -0.7
3,018,839 - ECD_02880 0.21 -0.3
3,018,885 + ECD_02880 0.27 +1.0
3,018,953 + ECD_02880 0.36 -0.7

Or see this region's nucleotide sequence