Strain Fitness in Escherichia coli BL21 around ECD_02496

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02493 and ECD_02494 are separated by 15 nucleotidesECD_02494 and ECD_02495 are separated by 75 nucleotidesECD_02495 and ECD_02496 are separated by 41 nucleotidesECD_02496 and ECD_02497 are separated by 30 nucleotidesECD_02497 and ECD_02498 are separated by 18 nucleotidesECD_02498 and ECD_02499 are separated by 136 nucleotides ECD_02493: ECD_02493 - putative membrane-anchored diguanylate cyclase, at 2,608,897 to 2,610,123 _02493 ECD_02494: ECD_02494 - OM lipoprotein putative positive effector of YfiN activity, at 2,610,139 to 2,610,621 _02494 ECD_02495: ECD_02495 - 50S ribosomal subunit protein L19, at 2,610,697 to 2,611,044 _02495 ECD_02496: ECD_02496 - tRNA m(1)G37 methyltransferase, SAM-dependent, at 2,611,086 to 2,611,853 _02496 ECD_02497: ECD_02497 - ribosome maturation factor, at 2,611,884 to 2,612,432 _02497 ECD_02498: ECD_02498 - 30S ribosomal subunit protein S16, at 2,612,451 to 2,612,699 _02498 ECD_02499: ECD_02499 - Signal Recognition Particle (SRP) component with 4.5S RNA (ffs), at 2,612,836 to 2,614,197 _02499 Position (kb) 2611 2612Strain fitness (log2 ratio) -1 0 1at 2610.121 kb on + strandat 2610.122 kb on - strandat 2610.131 kb on - strandat 2610.133 kb on - strandat 2610.179 kb on + strandat 2610.179 kb on + strandat 2610.255 kb on + strand, within ECD_02494at 2610.255 kb on + strand, within ECD_02494at 2610.319 kb on + strand, within ECD_02494at 2610.367 kb on - strand, within ECD_02494at 2610.417 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.421 kb on + strand, within ECD_02494at 2610.422 kb on - strand, within ECD_02494at 2610.422 kb on - strand, within ECD_02494at 2610.422 kb on - strand, within ECD_02494at 2610.422 kb on - strand, within ECD_02494at 2610.422 kb on - strand, within ECD_02494at 2610.436 kb on + strand, within ECD_02494at 2610.436 kb on + strand, within ECD_02494at 2610.436 kb on + strand, within ECD_02494at 2610.436 kb on + strand, within ECD_02494at 2610.449 kb on + strand, within ECD_02494at 2610.450 kb on - strand, within ECD_02494at 2610.450 kb on - strand, within ECD_02494at 2610.450 kb on - strand, within ECD_02494at 2610.490 kb on - strand, within ECD_02494at 2610.490 kb on - strand, within ECD_02494at 2610.610 kb on - strandat 2610.610 kb on - strandat 2610.638 kb on + strandat 2612.815 kb on - strandat 2612.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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2,610,121 + +0.4
2,610,122 - -1.5
2,610,131 - -0.4
2,610,133 - +0.2
2,610,179 + +0.3
2,610,179 + +1.6
2,610,255 + ECD_02494 0.24 -1.2
2,610,255 + ECD_02494 0.24 +0.2
2,610,319 + ECD_02494 0.37 +0.3
2,610,367 - ECD_02494 0.47 +0.4
2,610,417 + ECD_02494 0.58 -0.2
2,610,421 + ECD_02494 0.58 +1.6
2,610,421 + ECD_02494 0.58 -0.5
2,610,421 + ECD_02494 0.58 +0.4
2,610,421 + ECD_02494 0.58 +1.6
2,610,421 + ECD_02494 0.58 +0.5
2,610,421 + ECD_02494 0.58 -0.5
2,610,422 - ECD_02494 0.59 +0.3
2,610,422 - ECD_02494 0.59 +0.8
2,610,422 - ECD_02494 0.59 +1.1
2,610,422 - ECD_02494 0.59 -0.1
2,610,422 - ECD_02494 0.59 +1.3
2,610,436 + ECD_02494 0.61 +0.1
2,610,436 + ECD_02494 0.61 +0.7
2,610,436 + ECD_02494 0.61 -1.7
2,610,436 + ECD_02494 0.61 +0.2
2,610,449 + ECD_02494 0.64 +1.4
2,610,450 - ECD_02494 0.64 +0.5
2,610,450 - ECD_02494 0.64 -1.7
2,610,450 - ECD_02494 0.64 +0.9
2,610,490 - ECD_02494 0.73 +0.1
2,610,490 - ECD_02494 0.73 +0.6
2,610,610 - -0.5
2,610,610 - -1.1
2,610,638 + +0.1
2,612,815 - -0.4
2,612,828 - +0.4

Or see this region's nucleotide sequence