Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02256 and ECD_02257 are separated by 125 nucleotides ECD_02257 and ECD_02258 are separated by 28 nucleotides ECD_02258 and ECD_02259 overlap by 4 nucleotides ECD_02259 and ECD_02260 overlap by 4 nucleotides ECD_02260 and ECD_02261 are separated by 16 nucleotides
ECD_02256: ECD_02256 - putative DNA endonuclease, at 2,335,859 to 2,336,410
_02256
ECD_02257: ECD_02257 - DUF2544 family putative outer membrane protein, at 2,336,536 to 2,337,333
_02257
ECD_02258: ECD_02258 - putative fimbrial-like adhesin protein, at 2,337,362 to 2,337,913
_02258
ECD_02259: ECD_02259 - putative fimbrial-like adhesin protein, at 2,337,910 to 2,338,389
_02259
ECD_02260: ECD_02260 - putative fimbrial-like adhesin protein, at 2,338,386 to 2,338,892
_02260
ECD_02261: ECD_02261 - putative periplasmic pilin chaperone, at 2,338,909 to 2,339,661
_02261
Position (kb)
2337
2338 Strain fitness (log2 ratio)
-1
0
1 at 2336.469 kb on - strand at 2336.474 kb on + strand at 2336.593 kb on - strand at 2336.603 kb on - strand at 2336.614 kb on + strand at 2336.615 kb on - strand at 2336.671 kb on - strand, within ECD_02257 at 2336.884 kb on + strand, within ECD_02257 at 2336.960 kb on + strand, within ECD_02257 at 2336.961 kb on - strand, within ECD_02257 at 2336.961 kb on - strand, within ECD_02257 at 2336.963 kb on - strand, within ECD_02257 at 2337.009 kb on + strand, within ECD_02257 at 2337.010 kb on - strand, within ECD_02257 at 2337.027 kb on - strand, within ECD_02257 at 2337.100 kb on - strand, within ECD_02257 at 2337.279 kb on + strand at 2337.289 kb on - strand at 2337.302 kb on - strand at 2337.312 kb on + strand at 2337.325 kb on - strand at 2337.460 kb on + strand, within ECD_02258 at 2337.756 kb on - strand, within ECD_02258 at 2337.788 kb on - strand, within ECD_02258 at 2337.881 kb on - strand at 2337.881 kb on - strand at 2337.894 kb on + strand at 2337.938 kb on + strand at 2338.193 kb on + strand, within ECD_02259 at 2338.212 kb on - strand, within ECD_02259 at 2338.215 kb on + strand, within ECD_02259 at 2338.216 kb on - strand, within ECD_02259 at 2338.236 kb on + strand, within ECD_02259 at 2338.236 kb on + strand, within ECD_02259 at 2338.249 kb on - strand, within ECD_02259 at 2338.322 kb on - strand, within ECD_02259 at 2338.407 kb on - strand at 2338.415 kb on + strand at 2338.496 kb on + strand, within ECD_02260 at 2338.530 kb on - strand, within ECD_02260 at 2338.562 kb on + strand, within ECD_02260 at 2338.577 kb on + strand, within ECD_02260 at 2338.583 kb on + strand, within ECD_02260 at 2338.617 kb on - strand, within ECD_02260 at 2338.634 kb on + strand, within ECD_02260 at 2338.634 kb on + strand, within ECD_02260 at 2338.638 kb on + strand, within ECD_02260 at 2338.638 kb on + strand, within ECD_02260 at 2338.638 kb on + strand, within ECD_02260 at 2338.639 kb on - strand, within ECD_02260 at 2338.639 kb on - strand, within ECD_02260 at 2338.681 kb on + strand, within ECD_02260 at 2338.682 kb on - strand, within ECD_02260 at 2338.687 kb on - strand, within ECD_02260 at 2338.713 kb on + strand, within ECD_02260 at 2338.713 kb on + strand, within ECD_02260 at 2338.714 kb on - strand, within ECD_02260 at 2338.714 kb on - strand, within ECD_02260 at 2338.763 kb on + strand, within ECD_02260 at 2338.764 kb on - strand, within ECD_02260 at 2338.783 kb on - strand, within ECD_02260 at 2338.783 kb on - strand, within ECD_02260 at 2338.788 kb on + strand, within ECD_02260 at 2338.789 kb on - strand, within ECD_02260 at 2338.795 kb on - strand, within ECD_02260 at 2338.826 kb on - strand, within ECD_02260 at 2338.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 2,336,469 - +0.8 2,336,474 + +0.3 2,336,593 - -0.4 2,336,603 - +0.1 2,336,614 + +0.7 2,336,615 - -0.2 2,336,671 - ECD_02257 0.17 +0.0 2,336,884 + ECD_02257 0.44 -1.2 2,336,960 + ECD_02257 0.53 -0.7 2,336,961 - ECD_02257 0.53 +0.4 2,336,961 - ECD_02257 0.53 -0.7 2,336,963 - ECD_02257 0.54 +1.0 2,337,009 + ECD_02257 0.59 +0.4 2,337,010 - ECD_02257 0.59 -0.3 2,337,027 - ECD_02257 0.62 -1.3 2,337,100 - ECD_02257 0.71 -0.5 2,337,279 + +0.2 2,337,289 - -0.2 2,337,302 - -0.2 2,337,312 + -0.1 2,337,325 - -0.5 2,337,460 + ECD_02258 0.18 -1.2 2,337,756 - ECD_02258 0.71 -0.6 2,337,788 - ECD_02258 0.77 -0.5 2,337,881 - -0.7 2,337,881 - +0.3 2,337,894 + +0.6 2,337,938 + -0.0 2,338,193 + ECD_02259 0.59 -0.2 2,338,212 - ECD_02259 0.63 -0.1 2,338,215 + ECD_02259 0.64 -0.1 2,338,216 - ECD_02259 0.64 -0.0 2,338,236 + ECD_02259 0.68 +0.1 2,338,236 + ECD_02259 0.68 +0.9 2,338,249 - ECD_02259 0.71 +0.4 2,338,322 - ECD_02259 0.86 +0.3 2,338,407 - -1.6 2,338,415 + -0.9 2,338,496 + ECD_02260 0.22 +0.0 2,338,530 - ECD_02260 0.28 +1.5 2,338,562 + ECD_02260 0.35 -0.2 2,338,577 + ECD_02260 0.38 -0.4 2,338,583 + ECD_02260 0.39 +0.0 2,338,617 - ECD_02260 0.46 +0.7 2,338,634 + ECD_02260 0.49 -0.7 2,338,634 + ECD_02260 0.49 -0.3 2,338,638 + ECD_02260 0.50 -0.3 2,338,638 + ECD_02260 0.50 +0.5 2,338,638 + ECD_02260 0.50 +0.7 2,338,639 - ECD_02260 0.50 -0.2 2,338,639 - ECD_02260 0.50 +0.5 2,338,681 + ECD_02260 0.58 -0.0 2,338,682 - ECD_02260 0.58 -0.7 2,338,687 - ECD_02260 0.59 -0.8 2,338,713 + ECD_02260 0.64 +0.6 2,338,713 + ECD_02260 0.64 +0.5 2,338,714 - ECD_02260 0.65 -0.6 2,338,714 - ECD_02260 0.65 -0.2 2,338,763 + ECD_02260 0.74 -0.4 2,338,764 - ECD_02260 0.75 -0.2 2,338,783 - ECD_02260 0.78 +0.4 2,338,783 - ECD_02260 0.78 +0.1 2,338,788 + ECD_02260 0.79 +0.9 2,338,789 - ECD_02260 0.79 -0.7 2,338,795 - ECD_02260 0.81 -0.1 2,338,826 - ECD_02260 0.87 +0.6 2,338,879 - -0.6
Or see this region's nucleotide sequence