Strain Fitness in Escherichia coli BL21 around ECD_02258

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02256 and ECD_02257 are separated by 125 nucleotidesECD_02257 and ECD_02258 are separated by 28 nucleotidesECD_02258 and ECD_02259 overlap by 4 nucleotidesECD_02259 and ECD_02260 overlap by 4 nucleotidesECD_02260 and ECD_02261 are separated by 16 nucleotides ECD_02256: ECD_02256 - putative DNA endonuclease, at 2,335,859 to 2,336,410 _02256 ECD_02257: ECD_02257 - DUF2544 family putative outer membrane protein, at 2,336,536 to 2,337,333 _02257 ECD_02258: ECD_02258 - putative fimbrial-like adhesin protein, at 2,337,362 to 2,337,913 _02258 ECD_02259: ECD_02259 - putative fimbrial-like adhesin protein, at 2,337,910 to 2,338,389 _02259 ECD_02260: ECD_02260 - putative fimbrial-like adhesin protein, at 2,338,386 to 2,338,892 _02260 ECD_02261: ECD_02261 - putative periplasmic pilin chaperone, at 2,338,909 to 2,339,661 _02261 Position (kb) 2337 2338Strain fitness (log2 ratio) -1 0 1at 2336.469 kb on - strandat 2336.474 kb on + strandat 2336.593 kb on - strandat 2336.603 kb on - strandat 2336.614 kb on + strandat 2336.615 kb on - strandat 2336.671 kb on - strand, within ECD_02257at 2336.884 kb on + strand, within ECD_02257at 2336.960 kb on + strand, within ECD_02257at 2336.961 kb on - strand, within ECD_02257at 2336.961 kb on - strand, within ECD_02257at 2336.963 kb on - strand, within ECD_02257at 2337.009 kb on + strand, within ECD_02257at 2337.010 kb on - strand, within ECD_02257at 2337.027 kb on - strand, within ECD_02257at 2337.100 kb on - strand, within ECD_02257at 2337.279 kb on + strandat 2337.289 kb on - strandat 2337.302 kb on - strandat 2337.312 kb on + strandat 2337.325 kb on - strandat 2337.460 kb on + strand, within ECD_02258at 2337.756 kb on - strand, within ECD_02258at 2337.788 kb on - strand, within ECD_02258at 2337.881 kb on - strandat 2337.881 kb on - strandat 2337.894 kb on + strandat 2337.938 kb on + strandat 2338.193 kb on + strand, within ECD_02259at 2338.212 kb on - strand, within ECD_02259at 2338.215 kb on + strand, within ECD_02259at 2338.216 kb on - strand, within ECD_02259at 2338.236 kb on + strand, within ECD_02259at 2338.236 kb on + strand, within ECD_02259at 2338.249 kb on - strand, within ECD_02259at 2338.322 kb on - strand, within ECD_02259at 2338.407 kb on - strandat 2338.415 kb on + strandat 2338.496 kb on + strand, within ECD_02260at 2338.530 kb on - strand, within ECD_02260at 2338.562 kb on + strand, within ECD_02260at 2338.577 kb on + strand, within ECD_02260at 2338.583 kb on + strand, within ECD_02260at 2338.617 kb on - strand, within ECD_02260at 2338.634 kb on + strand, within ECD_02260at 2338.634 kb on + strand, within ECD_02260at 2338.638 kb on + strand, within ECD_02260at 2338.638 kb on + strand, within ECD_02260at 2338.638 kb on + strand, within ECD_02260at 2338.639 kb on - strand, within ECD_02260at 2338.639 kb on - strand, within ECD_02260at 2338.681 kb on + strand, within ECD_02260at 2338.682 kb on - strand, within ECD_02260at 2338.687 kb on - strand, within ECD_02260at 2338.713 kb on + strand, within ECD_02260at 2338.713 kb on + strand, within ECD_02260at 2338.714 kb on - strand, within ECD_02260at 2338.714 kb on - strand, within ECD_02260at 2338.763 kb on + strand, within ECD_02260at 2338.764 kb on - strand, within ECD_02260at 2338.783 kb on - strand, within ECD_02260at 2338.783 kb on - strand, within ECD_02260at 2338.788 kb on + strand, within ECD_02260at 2338.789 kb on - strand, within ECD_02260at 2338.795 kb on - strand, within ECD_02260at 2338.826 kb on - strand, within ECD_02260at 2338.879 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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2,336,469 - +0.8
2,336,474 + +0.3
2,336,593 - -0.4
2,336,603 - +0.1
2,336,614 + +0.7
2,336,615 - -0.2
2,336,671 - ECD_02257 0.17 +0.0
2,336,884 + ECD_02257 0.44 -1.2
2,336,960 + ECD_02257 0.53 -0.7
2,336,961 - ECD_02257 0.53 +0.4
2,336,961 - ECD_02257 0.53 -0.7
2,336,963 - ECD_02257 0.54 +1.0
2,337,009 + ECD_02257 0.59 +0.4
2,337,010 - ECD_02257 0.59 -0.3
2,337,027 - ECD_02257 0.62 -1.3
2,337,100 - ECD_02257 0.71 -0.5
2,337,279 + +0.2
2,337,289 - -0.2
2,337,302 - -0.2
2,337,312 + -0.1
2,337,325 - -0.5
2,337,460 + ECD_02258 0.18 -1.2
2,337,756 - ECD_02258 0.71 -0.6
2,337,788 - ECD_02258 0.77 -0.5
2,337,881 - -0.7
2,337,881 - +0.3
2,337,894 + +0.6
2,337,938 + -0.0
2,338,193 + ECD_02259 0.59 -0.2
2,338,212 - ECD_02259 0.63 -0.1
2,338,215 + ECD_02259 0.64 -0.1
2,338,216 - ECD_02259 0.64 -0.0
2,338,236 + ECD_02259 0.68 +0.1
2,338,236 + ECD_02259 0.68 +0.9
2,338,249 - ECD_02259 0.71 +0.4
2,338,322 - ECD_02259 0.86 +0.3
2,338,407 - -1.6
2,338,415 + -0.9
2,338,496 + ECD_02260 0.22 +0.0
2,338,530 - ECD_02260 0.28 +1.5
2,338,562 + ECD_02260 0.35 -0.2
2,338,577 + ECD_02260 0.38 -0.4
2,338,583 + ECD_02260 0.39 +0.0
2,338,617 - ECD_02260 0.46 +0.7
2,338,634 + ECD_02260 0.49 -0.7
2,338,634 + ECD_02260 0.49 -0.3
2,338,638 + ECD_02260 0.50 -0.3
2,338,638 + ECD_02260 0.50 +0.5
2,338,638 + ECD_02260 0.50 +0.7
2,338,639 - ECD_02260 0.50 -0.2
2,338,639 - ECD_02260 0.50 +0.5
2,338,681 + ECD_02260 0.58 -0.0
2,338,682 - ECD_02260 0.58 -0.7
2,338,687 - ECD_02260 0.59 -0.8
2,338,713 + ECD_02260 0.64 +0.6
2,338,713 + ECD_02260 0.64 +0.5
2,338,714 - ECD_02260 0.65 -0.6
2,338,714 - ECD_02260 0.65 -0.2
2,338,763 + ECD_02260 0.74 -0.4
2,338,764 - ECD_02260 0.75 -0.2
2,338,783 - ECD_02260 0.78 +0.4
2,338,783 - ECD_02260 0.78 +0.1
2,338,788 + ECD_02260 0.79 +0.9
2,338,789 - ECD_02260 0.79 -0.7
2,338,795 - ECD_02260 0.81 -0.1
2,338,826 - ECD_02260 0.87 +0.6
2,338,879 - -0.6

Or see this region's nucleotide sequence