Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02154 and ECD_02155 overlap by 67 nucleotides ECD_02155 and ECD_02156 overlap by 4 nucleotides
ECD_02154: ECD_02154 - putative membrane protein, at 2,220,159 to 2,224,763
_02154
ECD_02155: ECD_02155 - DUF1175 family protein, putative host defense protein, at 2,224,697 to 2,225,320
_02155
ECD_02156: ECD_02156 - DUF2138 family protein, putative host defense protein, at 2,225,317 to 2,227,005
_02156
Position (kb)
2224
2225
2226 Strain fitness (log2 ratio)
-1
0
1 at 2223.742 kb on + strand, within ECD_02154 at 2223.829 kb on - strand, within ECD_02154 at 2223.831 kb on - strand, within ECD_02154 at 2223.831 kb on - strand, within ECD_02154 at 2224.083 kb on - strand, within ECD_02154 at 2224.084 kb on + strand, within ECD_02154 at 2224.084 kb on + strand, within ECD_02154 at 2224.084 kb on + strand, within ECD_02154 at 2224.084 kb on + strand, within ECD_02154 at 2224.085 kb on - strand, within ECD_02154 at 2224.085 kb on - strand, within ECD_02154 at 2224.236 kb on + strand, within ECD_02154 at 2224.236 kb on + strand, within ECD_02154 at 2224.253 kb on + strand, within ECD_02154 at 2224.275 kb on + strand, within ECD_02154 at 2224.382 kb on + strand at 2224.472 kb on + strand at 2224.845 kb on + strand, within ECD_02155 at 2224.931 kb on + strand, within ECD_02155 at 2224.960 kb on - strand, within ECD_02155 at 2225.216 kb on + strand, within ECD_02155 at 2225.432 kb on - strand at 2225.432 kb on - strand at 2225.529 kb on + strand, within ECD_02156 at 2225.531 kb on + strand, within ECD_02156 at 2225.532 kb on - strand, within ECD_02156 at 2225.532 kb on - strand, within ECD_02156 at 2225.928 kb on - strand, within ECD_02156 at 2226.061 kb on - strand, within ECD_02156 at 2226.097 kb on + strand, within ECD_02156 at 2226.098 kb on - strand, within ECD_02156
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 2,223,742 + ECD_02154 0.78 -0.3 2,223,829 - ECD_02154 0.80 -0.9 2,223,831 - ECD_02154 0.80 -0.9 2,223,831 - ECD_02154 0.80 +0.6 2,224,083 - ECD_02154 0.85 -0.1 2,224,084 + ECD_02154 0.85 +0.6 2,224,084 + ECD_02154 0.85 +0.6 2,224,084 + ECD_02154 0.85 -0.4 2,224,084 + ECD_02154 0.85 +0.1 2,224,085 - ECD_02154 0.85 +0.7 2,224,085 - ECD_02154 0.85 +1.2 2,224,236 + ECD_02154 0.89 +0.9 2,224,236 + ECD_02154 0.89 -0.0 2,224,253 + ECD_02154 0.89 +0.1 2,224,275 + ECD_02154 0.89 +0.7 2,224,382 + +0.8 2,224,472 + +0.7 2,224,845 + ECD_02155 0.24 +0.3 2,224,931 + ECD_02155 0.38 +1.2 2,224,960 - ECD_02155 0.42 -0.5 2,225,216 + ECD_02155 0.83 -0.3 2,225,432 - -0.4 2,225,432 - +0.5 2,225,529 + ECD_02156 0.13 -0.2 2,225,531 + ECD_02156 0.13 +1.3 2,225,532 - ECD_02156 0.13 -0.6 2,225,532 - ECD_02156 0.13 -1.6 2,225,928 - ECD_02156 0.36 +0.5 2,226,061 - ECD_02156 0.44 +0.0 2,226,097 + ECD_02156 0.46 +0.8 2,226,098 - ECD_02156 0.46 +0.8
Or see this region's nucleotide sequence