Strain Fitness in Escherichia coli BL21 around ECD_02110

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02109 and ECD_02110 are separated by 1 nucleotidesECD_02110 and ECD_02111 are separated by 3 nucleotidesECD_02111 and ECD_02112 are separated by 332 nucleotides ECD_02109: ECD_02109 - microcin C ABC transporter permease, at 2,170,122 to 2,171,147 _02109 ECD_02110: ECD_02110 - microcin C ABC transporter ATPase, at 2,171,149 to 2,172,738 _02110 ECD_02111: ECD_02111 - uncharacterized protein, at 2,172,742 to 2,173,086 _02111 ECD_02112: ECD_02112 - bicyclomycin/cysteine/sulfonamide efflux transporter, at 2,173,419 to 2,174,609 _02112 Position (kb) 2171 2172 2173Strain fitness (log2 ratio) -1 0 1at 2170.427 kb on + strand, within ECD_02109at 2170.717 kb on + strand, within ECD_02109at 2170.717 kb on + strand, within ECD_02109at 2170.877 kb on + strand, within ECD_02109at 2170.927 kb on + strand, within ECD_02109at 2170.931 kb on + strand, within ECD_02109at 2171.135 kb on + strandat 2171.214 kb on + strandat 2171.214 kb on + strandat 2171.215 kb on - strandat 2171.679 kb on - strand, within ECD_02110at 2171.679 kb on - strand, within ECD_02110at 2171.903 kb on - strand, within ECD_02110at 2171.916 kb on - strand, within ECD_02110at 2172.099 kb on - strand, within ECD_02110at 2172.225 kb on + strand, within ECD_02110at 2172.315 kb on - strand, within ECD_02110at 2172.448 kb on - strand, within ECD_02110at 2172.468 kb on - strand, within ECD_02110at 2172.468 kb on - strand, within ECD_02110at 2172.468 kb on - strand, within ECD_02110at 2172.624 kb on - strandat 2172.642 kb on - strandat 2172.712 kb on - strandat 2172.723 kb on - strandat 2172.756 kb on - strandat 2172.756 kb on - strandat 2172.910 kb on - strand, within ECD_02111at 2172.910 kb on - strand, within ECD_02111at 2172.912 kb on - strand, within ECD_02111at 2172.931 kb on - strand, within ECD_02111at 2172.931 kb on - strand, within ECD_02111at 2172.931 kb on - strand, within ECD_02111at 2173.162 kb on - strandat 2173.223 kb on - strandat 2173.255 kb on - strandat 2173.255 kb on - strandat 2173.255 kb on - strandat 2173.255 kb on - strandat 2173.290 kb on - strandat 2173.341 kb on + strandat 2173.416 kb on - strandat 2173.552 kb on - strand, within ECD_02112

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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2,170,427 + ECD_02109 0.30 -1.0
2,170,717 + ECD_02109 0.58 +0.4
2,170,717 + ECD_02109 0.58 -1.1
2,170,877 + ECD_02109 0.74 +0.5
2,170,927 + ECD_02109 0.78 +1.3
2,170,931 + ECD_02109 0.79 +1.3
2,171,135 + +1.0
2,171,214 + -1.1
2,171,214 + -0.2
2,171,215 - +1.2
2,171,679 - ECD_02110 0.33 -1.4
2,171,679 - ECD_02110 0.33 -0.9
2,171,903 - ECD_02110 0.47 -1.3
2,171,916 - ECD_02110 0.48 -0.7
2,172,099 - ECD_02110 0.60 +1.2
2,172,225 + ECD_02110 0.68 -1.3
2,172,315 - ECD_02110 0.73 +1.1
2,172,448 - ECD_02110 0.82 +0.6
2,172,468 - ECD_02110 0.83 -0.8
2,172,468 - ECD_02110 0.83 -0.5
2,172,468 - ECD_02110 0.83 -0.4
2,172,624 - +0.6
2,172,642 - +1.0
2,172,712 - -1.1
2,172,723 - +0.5
2,172,756 - +0.6
2,172,756 - +0.4
2,172,910 - ECD_02111 0.49 -0.9
2,172,910 - ECD_02111 0.49 +0.9
2,172,912 - ECD_02111 0.49 +0.7
2,172,931 - ECD_02111 0.55 +0.1
2,172,931 - ECD_02111 0.55 +0.1
2,172,931 - ECD_02111 0.55 +0.1
2,173,162 - +0.8
2,173,223 - -1.5
2,173,255 - +0.4
2,173,255 - -0.4
2,173,255 - -0.8
2,173,255 - -0.5
2,173,290 - -0.8
2,173,341 + -0.3
2,173,416 - -0.2
2,173,552 - ECD_02112 0.11 -1.2

Or see this region's nucleotide sequence