Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02099 and ECD_02100 overlap by 4 nucleotides ECD_02100 and ECD_02101 are separated by 154 nucleotides ECD_02101 and ECD_02102 are separated by 222 nucleotides
ECD_02099: ECD_02099 - lactose/glucose efflux system, at 2,158,712 to 2,159,893
_02099
ECD_02100: ECD_02100 - UPF0153 cysteine cluster protein, at 2,159,890 to 2,160,144
_02100
ECD_02101: ECD_02101 - elongation factor P-like protein, at 2,160,299 to 2,160,871
_02101
ECD_02102: ECD_02102 - putative NAD-dependent D-mannonate oxidoreductase, at 2,161,094 to 2,162,560
_02102
Position (kb)
2160
2161 Strain fitness (log2 ratio)
-2
-1
0
1 at 2159.414 kb on + strand, within ECD_02099 at 2159.414 kb on + strand, within ECD_02099 at 2159.437 kb on + strand, within ECD_02099 at 2159.744 kb on + strand, within ECD_02099 at 2159.744 kb on + strand, within ECD_02099 at 2159.745 kb on - strand, within ECD_02099 at 2159.871 kb on + strand at 2159.949 kb on + strand, within ECD_02100 at 2160.055 kb on - strand, within ECD_02100 at 2160.087 kb on + strand, within ECD_02100 at 2160.144 kb on + strand at 2160.145 kb on - strand at 2160.192 kb on - strand at 2160.406 kb on + strand, within ECD_02101 at 2160.406 kb on + strand, within ECD_02101 at 2160.414 kb on - strand, within ECD_02101 at 2160.453 kb on + strand, within ECD_02101 at 2160.510 kb on - strand, within ECD_02101 at 2160.566 kb on + strand, within ECD_02101 at 2160.577 kb on + strand, within ECD_02101 at 2161.094 kb on - strand at 2161.132 kb on - strand at 2161.218 kb on + strand at 2161.326 kb on + strand, within ECD_02102 at 2161.326 kb on + strand, within ECD_02102 at 2161.326 kb on + strand, within ECD_02102 at 2161.327 kb on - strand, within ECD_02102 at 2161.328 kb on + strand, within ECD_02102 at 2161.397 kb on - strand, within ECD_02102 at 2161.488 kb on - strand, within ECD_02102 at 2161.492 kb on + strand, within ECD_02102 at 2161.493 kb on - strand, within ECD_02102 at 2161.493 kb on - strand, within ECD_02102 at 2161.655 kb on - strand, within ECD_02102
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 2,159,414 + ECD_02099 0.59 +0.7 2,159,414 + ECD_02099 0.59 +0.2 2,159,437 + ECD_02099 0.61 +0.1 2,159,744 + ECD_02099 0.87 -0.2 2,159,744 + ECD_02099 0.87 -1.0 2,159,745 - ECD_02099 0.87 -1.6 2,159,871 + +0.4 2,159,949 + ECD_02100 0.23 -0.2 2,160,055 - ECD_02100 0.65 +0.9 2,160,087 + ECD_02100 0.77 +0.2 2,160,144 + +1.6 2,160,145 - -0.2 2,160,192 - -0.5 2,160,406 + ECD_02101 0.19 -0.4 2,160,406 + ECD_02101 0.19 -0.1 2,160,414 - ECD_02101 0.20 -1.2 2,160,453 + ECD_02101 0.27 +1.1 2,160,510 - ECD_02101 0.37 +1.3 2,160,566 + ECD_02101 0.47 -0.7 2,160,577 + ECD_02101 0.49 -0.6 2,161,094 - -0.1 2,161,132 - -0.0 2,161,218 + -1.4 2,161,326 + ECD_02102 0.16 -2.4 2,161,326 + ECD_02102 0.16 +0.6 2,161,326 + ECD_02102 0.16 -0.3 2,161,327 - ECD_02102 0.16 +0.3 2,161,328 + ECD_02102 0.16 -0.2 2,161,397 - ECD_02102 0.21 -2.2 2,161,488 - ECD_02102 0.27 -0.3 2,161,492 + ECD_02102 0.27 -0.1 2,161,493 - ECD_02102 0.27 -0.1 2,161,493 - ECD_02102 0.27 -0.0 2,161,655 - ECD_02102 0.38 -0.4
Or see this region's nucleotide sequence