Strain Fitness in Escherichia coli BL21 around ECD_02086

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02085 and ECD_02086 are separated by 204 nucleotidesECD_02086 and ECD_02087 are separated by 98 nucleotides ECD_02085: ECD_02085 - lysine transporter, at 2,141,962 to 2,143,431 _02085 ECD_02086: ECD_02086 - putative DNA-binding transcriptional regulator, at 2,143,636 to 2,144,517 _02086 ECD_02087: ECD_02087 - UPF0324 family inner membrane protein, at 2,144,616 to 2,145,665 _02087 Position (kb) 2143 2144 2145Strain fitness (log2 ratio) -2 -1 0 1 2at 2142.675 kb on - strand, within ECD_02085at 2142.675 kb on - strand, within ECD_02085at 2142.707 kb on - strand, within ECD_02085at 2142.799 kb on - strand, within ECD_02085at 2142.799 kb on - strand, within ECD_02085at 2142.799 kb on - strand, within ECD_02085at 2142.799 kb on - strand, within ECD_02085at 2142.922 kb on - strand, within ECD_02085at 2142.930 kb on + strand, within ECD_02085at 2142.931 kb on - strand, within ECD_02085at 2142.996 kb on - strand, within ECD_02085at 2142.996 kb on - strand, within ECD_02085at 2143.105 kb on - strand, within ECD_02085at 2143.122 kb on - strand, within ECD_02085at 2143.122 kb on - strand, within ECD_02085at 2143.167 kb on - strand, within ECD_02085at 2143.167 kb on - strand, within ECD_02085at 2143.167 kb on - strand, within ECD_02085at 2143.179 kb on - strand, within ECD_02085at 2143.207 kb on - strand, within ECD_02085at 2143.207 kb on - strand, within ECD_02085at 2143.207 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.209 kb on - strand, within ECD_02085at 2143.267 kb on - strand, within ECD_02085at 2143.394 kb on - strandat 2143.512 kb on + strandat 2143.543 kb on - strandat 2143.714 kb on + strandat 2143.715 kb on - strandat 2143.715 kb on - strandat 2143.715 kb on - strandat 2143.715 kb on - strandat 2143.729 kb on - strand, within ECD_02086at 2143.865 kb on - strand, within ECD_02086at 2143.907 kb on - strand, within ECD_02086at 2143.910 kb on + strand, within ECD_02086at 2143.911 kb on - strand, within ECD_02086at 2144.214 kb on - strand, within ECD_02086at 2144.227 kb on - strand, within ECD_02086at 2144.238 kb on - strand, within ECD_02086at 2144.238 kb on - strand, within ECD_02086at 2144.477 kb on - strandat 2144.625 kb on - strandat 2144.648 kb on + strandat 2144.648 kb on + strandat 2144.649 kb on - strandat 2144.649 kb on - strandat 2144.649 kb on - strandat 2144.850 kb on + strand, within ECD_02087at 2144.851 kb on - strand, within ECD_02087at 2144.854 kb on + strand, within ECD_02087at 2144.877 kb on + strand, within ECD_02087at 2144.957 kb on + strand, within ECD_02087at 2145.041 kb on + strand, within ECD_02087at 2145.167 kb on - strand, within ECD_02087at 2145.191 kb on + strand, within ECD_02087at 2145.213 kb on + strand, within ECD_02087at 2145.213 kb on + strand, within ECD_02087at 2145.213 kb on + strand, within ECD_02087at 2145.214 kb on - strand, within ECD_02087at 2145.446 kb on + strand, within ECD_02087

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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2,142,675 - ECD_02085 0.49 -1.7
2,142,675 - ECD_02085 0.49 -0.0
2,142,707 - ECD_02085 0.51 -0.7
2,142,799 - ECD_02085 0.57 -0.9
2,142,799 - ECD_02085 0.57 -0.3
2,142,799 - ECD_02085 0.57 +0.4
2,142,799 - ECD_02085 0.57 +0.5
2,142,922 - ECD_02085 0.65 -0.7
2,142,930 + ECD_02085 0.66 -2.1
2,142,931 - ECD_02085 0.66 -0.5
2,142,996 - ECD_02085 0.70 -0.6
2,142,996 - ECD_02085 0.70 +0.5
2,143,105 - ECD_02085 0.78 -0.7
2,143,122 - ECD_02085 0.79 -0.7
2,143,122 - ECD_02085 0.79 +0.6
2,143,167 - ECD_02085 0.82 -0.1
2,143,167 - ECD_02085 0.82 -0.3
2,143,167 - ECD_02085 0.82 +1.0
2,143,179 - ECD_02085 0.83 -1.2
2,143,207 - ECD_02085 0.85 -0.4
2,143,207 - ECD_02085 0.85 +0.7
2,143,207 - ECD_02085 0.85 -0.3
2,143,209 - ECD_02085 0.85 -0.3
2,143,209 - ECD_02085 0.85 +0.7
2,143,209 - ECD_02085 0.85 -0.7
2,143,209 - ECD_02085 0.85 +0.1
2,143,209 - ECD_02085 0.85 -0.8
2,143,209 - ECD_02085 0.85 +0.4
2,143,209 - ECD_02085 0.85 +0.3
2,143,209 - ECD_02085 0.85 -2.3
2,143,209 - ECD_02085 0.85 +0.2
2,143,267 - ECD_02085 0.89 -0.9
2,143,394 - -0.1
2,143,512 + +0.3
2,143,543 - +0.7
2,143,714 + +1.1
2,143,715 - -0.0
2,143,715 - +0.8
2,143,715 - -0.5
2,143,715 - +0.2
2,143,729 - ECD_02086 0.11 -0.2
2,143,865 - ECD_02086 0.26 -0.5
2,143,907 - ECD_02086 0.31 -0.2
2,143,910 + ECD_02086 0.31 +0.0
2,143,911 - ECD_02086 0.31 -0.6
2,144,214 - ECD_02086 0.66 -0.0
2,144,227 - ECD_02086 0.67 -0.5
2,144,238 - ECD_02086 0.68 -0.4
2,144,238 - ECD_02086 0.68 -0.3
2,144,477 - +1.3
2,144,625 - +1.0
2,144,648 + -0.7
2,144,648 + +0.0
2,144,649 - -0.5
2,144,649 - -1.7
2,144,649 - +0.5
2,144,850 + ECD_02087 0.22 +0.2
2,144,851 - ECD_02087 0.22 -0.6
2,144,854 + ECD_02087 0.23 +0.7
2,144,877 + ECD_02087 0.25 +2.1
2,144,957 + ECD_02087 0.32 +2.3
2,145,041 + ECD_02087 0.40 +1.1
2,145,167 - ECD_02087 0.52 +0.6
2,145,191 + ECD_02087 0.55 +2.0
2,145,213 + ECD_02087 0.57 +0.3
2,145,213 + ECD_02087 0.57 -0.3
2,145,213 + ECD_02087 0.57 -0.4
2,145,214 - ECD_02087 0.57 -0.0
2,145,446 + ECD_02087 0.79 +0.4

Or see this region's nucleotide sequence