Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02085 and ECD_02086 are separated by 204 nucleotides ECD_02086 and ECD_02087 are separated by 98 nucleotides
ECD_02085: ECD_02085 - lysine transporter, at 2,141,962 to 2,143,431
_02085
ECD_02086: ECD_02086 - putative DNA-binding transcriptional regulator, at 2,143,636 to 2,144,517
_02086
ECD_02087: ECD_02087 - UPF0324 family inner membrane protein, at 2,144,616 to 2,145,665
_02087
Position (kb)
2143
2144
2145 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2142.675 kb on - strand, within ECD_02085 at 2142.675 kb on - strand, within ECD_02085 at 2142.707 kb on - strand, within ECD_02085 at 2142.799 kb on - strand, within ECD_02085 at 2142.799 kb on - strand, within ECD_02085 at 2142.799 kb on - strand, within ECD_02085 at 2142.799 kb on - strand, within ECD_02085 at 2142.922 kb on - strand, within ECD_02085 at 2142.930 kb on + strand, within ECD_02085 at 2142.931 kb on - strand, within ECD_02085 at 2142.996 kb on - strand, within ECD_02085 at 2142.996 kb on - strand, within ECD_02085 at 2143.105 kb on - strand, within ECD_02085 at 2143.122 kb on - strand, within ECD_02085 at 2143.122 kb on - strand, within ECD_02085 at 2143.167 kb on - strand, within ECD_02085 at 2143.167 kb on - strand, within ECD_02085 at 2143.167 kb on - strand, within ECD_02085 at 2143.179 kb on - strand, within ECD_02085 at 2143.207 kb on - strand, within ECD_02085 at 2143.207 kb on - strand, within ECD_02085 at 2143.207 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.209 kb on - strand, within ECD_02085 at 2143.267 kb on - strand, within ECD_02085 at 2143.394 kb on - strand at 2143.512 kb on + strand at 2143.543 kb on - strand at 2143.714 kb on + strand at 2143.715 kb on - strand at 2143.715 kb on - strand at 2143.715 kb on - strand at 2143.715 kb on - strand at 2143.729 kb on - strand, within ECD_02086 at 2143.865 kb on - strand, within ECD_02086 at 2143.907 kb on - strand, within ECD_02086 at 2143.910 kb on + strand, within ECD_02086 at 2143.911 kb on - strand, within ECD_02086 at 2144.214 kb on - strand, within ECD_02086 at 2144.227 kb on - strand, within ECD_02086 at 2144.238 kb on - strand, within ECD_02086 at 2144.238 kb on - strand, within ECD_02086 at 2144.477 kb on - strand at 2144.625 kb on - strand at 2144.648 kb on + strand at 2144.648 kb on + strand at 2144.649 kb on - strand at 2144.649 kb on - strand at 2144.649 kb on - strand at 2144.850 kb on + strand, within ECD_02087 at 2144.851 kb on - strand, within ECD_02087 at 2144.854 kb on + strand, within ECD_02087 at 2144.877 kb on + strand, within ECD_02087 at 2144.957 kb on + strand, within ECD_02087 at 2145.041 kb on + strand, within ECD_02087 at 2145.167 kb on - strand, within ECD_02087 at 2145.191 kb on + strand, within ECD_02087 at 2145.213 kb on + strand, within ECD_02087 at 2145.213 kb on + strand, within ECD_02087 at 2145.213 kb on + strand, within ECD_02087 at 2145.214 kb on - strand, within ECD_02087 at 2145.446 kb on + strand, within ECD_02087
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 2,142,675 - ECD_02085 0.49 -1.7 2,142,675 - ECD_02085 0.49 -0.0 2,142,707 - ECD_02085 0.51 -0.7 2,142,799 - ECD_02085 0.57 -0.9 2,142,799 - ECD_02085 0.57 -0.3 2,142,799 - ECD_02085 0.57 +0.4 2,142,799 - ECD_02085 0.57 +0.5 2,142,922 - ECD_02085 0.65 -0.7 2,142,930 + ECD_02085 0.66 -2.1 2,142,931 - ECD_02085 0.66 -0.5 2,142,996 - ECD_02085 0.70 -0.6 2,142,996 - ECD_02085 0.70 +0.5 2,143,105 - ECD_02085 0.78 -0.7 2,143,122 - ECD_02085 0.79 -0.7 2,143,122 - ECD_02085 0.79 +0.6 2,143,167 - ECD_02085 0.82 -0.1 2,143,167 - ECD_02085 0.82 -0.3 2,143,167 - ECD_02085 0.82 +1.0 2,143,179 - ECD_02085 0.83 -1.2 2,143,207 - ECD_02085 0.85 -0.4 2,143,207 - ECD_02085 0.85 +0.7 2,143,207 - ECD_02085 0.85 -0.3 2,143,209 - ECD_02085 0.85 -0.3 2,143,209 - ECD_02085 0.85 +0.7 2,143,209 - ECD_02085 0.85 -0.7 2,143,209 - ECD_02085 0.85 +0.1 2,143,209 - ECD_02085 0.85 -0.8 2,143,209 - ECD_02085 0.85 +0.4 2,143,209 - ECD_02085 0.85 +0.3 2,143,209 - ECD_02085 0.85 -2.3 2,143,209 - ECD_02085 0.85 +0.2 2,143,267 - ECD_02085 0.89 -0.9 2,143,394 - -0.1 2,143,512 + +0.3 2,143,543 - +0.7 2,143,714 + +1.1 2,143,715 - -0.0 2,143,715 - +0.8 2,143,715 - -0.5 2,143,715 - +0.2 2,143,729 - ECD_02086 0.11 -0.2 2,143,865 - ECD_02086 0.26 -0.5 2,143,907 - ECD_02086 0.31 -0.2 2,143,910 + ECD_02086 0.31 +0.0 2,143,911 - ECD_02086 0.31 -0.6 2,144,214 - ECD_02086 0.66 -0.0 2,144,227 - ECD_02086 0.67 -0.5 2,144,238 - ECD_02086 0.68 -0.4 2,144,238 - ECD_02086 0.68 -0.3 2,144,477 - +1.3 2,144,625 - +1.0 2,144,648 + -0.7 2,144,648 + +0.0 2,144,649 - -0.5 2,144,649 - -1.7 2,144,649 - +0.5 2,144,850 + ECD_02087 0.22 +0.2 2,144,851 - ECD_02087 0.22 -0.6 2,144,854 + ECD_02087 0.23 +0.7 2,144,877 + ECD_02087 0.25 +2.1 2,144,957 + ECD_02087 0.32 +2.3 2,145,041 + ECD_02087 0.40 +1.1 2,145,167 - ECD_02087 0.52 +0.6 2,145,191 + ECD_02087 0.55 +2.0 2,145,213 + ECD_02087 0.57 +0.3 2,145,213 + ECD_02087 0.57 -0.3 2,145,213 + ECD_02087 0.57 -0.4 2,145,214 - ECD_02087 0.57 -0.0 2,145,446 + ECD_02087 0.79 +0.4
Or see this region's nucleotide sequence