Strain Fitness in Escherichia coli BL21 around ECD_01928

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01926 and ECD_01927 overlap by 19 nucleotidesECD_01927 and ECD_01928 overlap by 7 nucleotidesECD_01928 and ECD_01929 are separated by 95 nucleotides ECD_01926: ECD_01926 - N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase, at 1,990,928 to 1,991,665 _01926 ECD_01927: ECD_01927 - imidazole glycerol phosphate synthase, catalytic subunit with HisH, at 1,991,647 to 1,992,423 _01927 ECD_01928: ECD_01928 - phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase, at 1,992,417 to 1,993,028 _01928 ECD_01929: ECD_01929 - regulator of length of O-antigen component of lipopolysaccharide chains, at 1,993,124 to 1,994,104 _01929 Position (kb) 1992 1993 1994Strain fitness (log2 ratio) -2 -1 0 1at 1991.484 kb on + strand, within ECD_01926at 1991.484 kb on + strand, within ECD_01926at 1991.486 kb on + strand, within ECD_01926at 1991.663 kb on + strandat 1992.416 kb on + strandat 1992.791 kb on + strand, within ECD_01928at 1992.816 kb on + strand, within ECD_01928at 1992.904 kb on + strand, within ECD_01928at 1993.263 kb on - strand, within ECD_01929at 1993.342 kb on - strand, within ECD_01929at 1993.382 kb on - strand, within ECD_01929at 1993.382 kb on - strand, within ECD_01929at 1993.424 kb on - strand, within ECD_01929at 1993.424 kb on - strand, within ECD_01929at 1993.424 kb on - strand, within ECD_01929at 1993.436 kb on - strand, within ECD_01929at 1993.654 kb on - strand, within ECD_01929at 1993.699 kb on - strand, within ECD_01929at 1993.730 kb on - strand, within ECD_01929at 1993.821 kb on - strand, within ECD_01929at 1993.864 kb on - strand, within ECD_01929at 1993.864 kb on - strand, within ECD_01929at 1993.864 kb on - strand, within ECD_01929at 1993.868 kb on - strand, within ECD_01929at 1993.886 kb on - strand, within ECD_01929at 1993.886 kb on - strand, within ECD_01929

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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1,991,484 + ECD_01926 0.75 +0.9
1,991,484 + ECD_01926 0.75 +0.9
1,991,486 + ECD_01926 0.76 -0.3
1,991,663 + -0.3
1,992,416 + +0.6
1,992,791 + ECD_01928 0.61 -2.0
1,992,816 + ECD_01928 0.65 -0.8
1,992,904 + ECD_01928 0.80 -0.3
1,993,263 - ECD_01929 0.14 +0.2
1,993,342 - ECD_01929 0.22 -0.5
1,993,382 - ECD_01929 0.26 -0.8
1,993,382 - ECD_01929 0.26 +0.6
1,993,424 - ECD_01929 0.31 -0.8
1,993,424 - ECD_01929 0.31 +0.5
1,993,424 - ECD_01929 0.31 +0.5
1,993,436 - ECD_01929 0.32 +0.0
1,993,654 - ECD_01929 0.54 +0.3
1,993,699 - ECD_01929 0.59 -0.8
1,993,730 - ECD_01929 0.62 -0.7
1,993,821 - ECD_01929 0.71 +1.2
1,993,864 - ECD_01929 0.75 +0.1
1,993,864 - ECD_01929 0.75 +0.9
1,993,864 - ECD_01929 0.75 -0.3
1,993,868 - ECD_01929 0.76 -0.5
1,993,886 - ECD_01929 0.78 +0.9
1,993,886 - ECD_01929 0.78 -0.1

Or see this region's nucleotide sequence