Strain Fitness in Escherichia coli BL21 around ECD_01571

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01570 and ECD_01571 are separated by 24 nucleotidesECD_01571 and ECD_01572 are separated by 10 nucleotides ECD_01570: ECD_01570 - pheromone AI-2 transporter, at 1,619,110 to 1,620,144 _01570 ECD_01571: ECD_01571 - pyridine nucleotide transhydrogenase, beta subunit, at 1,620,169 to 1,621,557 _01571 ECD_01572: ECD_01572 - pyridine nucleotide transhydrogenase, alpha subunit, at 1,621,568 to 1,623,100 _01572 Position (kb) 1620 1621 1622Strain fitness (log2 ratio) -2 -1 0 1at 1619.589 kb on + strand, within ECD_01570at 1620.496 kb on - strand, within ECD_01571at 1620.496 kb on - strand, within ECD_01571at 1620.784 kb on - strand, within ECD_01571at 1620.784 kb on - strand, within ECD_01571at 1620.856 kb on - strand, within ECD_01571at 1621.285 kb on - strand, within ECD_01571at 1621.530 kb on - strandat 1621.540 kb on - strandat 1621.558 kb on - strandat 1621.751 kb on - strand, within ECD_01572at 1622.221 kb on - strand, within ECD_01572at 1622.221 kb on - strand, within ECD_01572at 1622.304 kb on - strand, within ECD_01572

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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1,619,589 + ECD_01570 0.46 +1.4
1,620,496 - ECD_01571 0.24 -1.0
1,620,496 - ECD_01571 0.24 -0.0
1,620,784 - ECD_01571 0.44 -1.9
1,620,784 - ECD_01571 0.44 -1.1
1,620,856 - ECD_01571 0.49 -0.5
1,621,285 - ECD_01571 0.80 -0.9
1,621,530 - -2.5
1,621,540 - +0.5
1,621,558 - -2.0
1,621,751 - ECD_01572 0.12 +0.4
1,622,221 - ECD_01572 0.43 -0.3
1,622,221 - ECD_01572 0.43 +0.9
1,622,304 - ECD_01572 0.48 -1.5

Or see this region's nucleotide sequence