Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01444 and ECD_01445 are separated by 1 nucleotides ECD_01445 and ECD_01446 are separated by 13 nucleotides ECD_01446 and ECD_01447 are separated by 257 nucleotides
ECD_01444: ECD_01444 - D,D-dipeptide ABC transporter permease, at 1,515,375 to 1,516,397
_01444
ECD_01445: ECD_01445 - D,D-dipeptide ABC transporter periplasmic binding protein, at 1,516,399 to 1,517,949
_01445
ECD_01446: ECD_01446 - D-ala-D-ala dipeptidase, Zn-dependent, at 1,517,963 to 1,518,544
_01446
ECD_01447: ECD_01447 - oxygen sensor, c-di-GMP phosphodiesterase, heme-regulated; cold- and stationary phase-induced bioflim regulator, at 1,518,802 to 1,521,201
_01447
Position (kb) 1516
1517
1518 Strain fitness (log2 ratio) -1
0
1
2
3 at 1515.419 kb on - strand at 1516.038 kb on + strand, within ECD_01444 at 1516.207 kb on + strand, within ECD_01444 at 1516.405 kb on - strand at 1516.511 kb on + strand at 1516.687 kb on - strand, within ECD_01445 at 1516.733 kb on + strand, within ECD_01445 at 1516.837 kb on - strand, within ECD_01445 at 1518.256 kb on + strand, within ECD_01446 at 1518.283 kb on - strand, within ECD_01446 at 1518.452 kb on - strand, within ECD_01446 at 1518.544 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 1,515,419 - +0.0 1,516,038 + ECD_01444 0.65 -0.3 1,516,207 + ECD_01444 0.81 -0.5 1,516,405 - -1.1 1,516,511 + +1.0 1,516,687 - ECD_01445 0.19 -0.1 1,516,733 + ECD_01445 0.22 -1.5 1,516,837 - ECD_01445 0.28 -0.6 1,518,256 + ECD_01446 0.50 +0.2 1,518,283 - ECD_01446 0.55 +0.6 1,518,452 - ECD_01446 0.84 +3.2 1,518,544 + -0.1
Or see this region's nucleotide sequence