Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00952 and ECD_00953 are separated by 11 nucleotides ECD_00953 and ECD_00954 are separated by 129 nucleotides
ECD_00952: ECD_00952 - 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent, at 1,012,933 to 1,015,041
_00952
ECD_00953: ECD_00953 - replication regulatory ABC-F family DNA-binding ATPase, at 1,015,053 to 1,016,960
_00953
ECD_00954: ECD_00954 - paraquat-inducible, SoxRS-regulated inner membrane protein, at 1,017,090 to 1,018,343
_00954
Position (kb)
1015
1016
1017 Strain fitness (log2 ratio)
-2
-1
0
1 at 1014.115 kb on + strand, within ECD_00952 at 1014.214 kb on + strand, within ECD_00952 at 1014.236 kb on - strand, within ECD_00952 at 1014.645 kb on + strand, within ECD_00952 at 1014.649 kb on + strand, within ECD_00952 at 1015.051 kb on + strand at 1015.051 kb on + strand at 1015.067 kb on + strand at 1015.707 kb on - strand, within ECD_00953 at 1015.752 kb on + strand, within ECD_00953 at 1016.080 kb on + strand, within ECD_00953 at 1016.208 kb on + strand, within ECD_00953 at 1016.273 kb on + strand, within ECD_00953 at 1016.509 kb on - strand, within ECD_00953 at 1016.649 kb on + strand, within ECD_00953 at 1016.737 kb on + strand, within ECD_00953 at 1016.737 kb on + strand, within ECD_00953 at 1016.737 kb on + strand, within ECD_00953 at 1016.744 kb on + strand, within ECD_00953 at 1017.068 kb on - strand at 1017.306 kb on - strand, within ECD_00954 at 1017.582 kb on + strand, within ECD_00954 at 1017.770 kb on + strand, within ECD_00954
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 1,014,115 + ECD_00952 0.56 +0.0 1,014,214 + ECD_00952 0.61 -1.4 1,014,236 - ECD_00952 0.62 +0.3 1,014,645 + ECD_00952 0.81 +1.2 1,014,649 + ECD_00952 0.81 -0.5 1,015,051 + +0.3 1,015,051 + -1.9 1,015,067 + -0.6 1,015,707 - ECD_00953 0.34 +0.8 1,015,752 + ECD_00953 0.37 +0.1 1,016,080 + ECD_00953 0.54 -1.4 1,016,208 + ECD_00953 0.61 -0.6 1,016,273 + ECD_00953 0.64 -2.1 1,016,509 - ECD_00953 0.76 +0.3 1,016,649 + ECD_00953 0.84 -1.2 1,016,737 + ECD_00953 0.88 +0.7 1,016,737 + ECD_00953 0.88 -1.6 1,016,737 + ECD_00953 0.88 +0.6 1,016,744 + ECD_00953 0.89 -0.5 1,017,068 - -0.4 1,017,306 - ECD_00954 0.17 +0.4 1,017,582 + ECD_00954 0.39 -1.0 1,017,770 + ECD_00954 0.54 -0.7
Or see this region's nucleotide sequence