Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00669 and ECD_00670 are separated by 270 nucleotides ECD_00670 and ECD_00671 are separated by 22 nucleotides ECD_00671 and ECD_00672 overlap by 7 nucleotides
ECD_00669: ECD_00669 - dipeptide and tripeptide permease D, at 699,639 to 701,120
_00669
ECD_00670: ECD_00670 - NIF3 family metal-binding protein, at 701,391 to 702,134
_00670
ECD_00671: ECD_00671 - putative allophanate hydrolase, subunit 1, at 702,157 to 702,813
_00671
ECD_00672: ECD_00672 - putative allophanate hydrolase, subunit 2, at 702,807 to 703,739
_00672
Position (kb) 701
702
703 Strain fitness (log2 ratio) -2
-1
0
1 at 700.401 kb on + strand, within ECD_00669 at 700.539 kb on - strand, within ECD_00669 at 700.664 kb on + strand, within ECD_00669 at 700.667 kb on + strand, within ECD_00669 at 700.667 kb on + strand, within ECD_00669 at 700.668 kb on - strand, within ECD_00669 at 700.690 kb on + strand, within ECD_00669 at 700.691 kb on - strand, within ECD_00669 at 700.691 kb on - strand, within ECD_00669 at 700.691 kb on - strand, within ECD_00669 at 700.691 kb on - strand, within ECD_00669 at 700.769 kb on + strand, within ECD_00669 at 700.794 kb on - strand, within ECD_00669 at 700.811 kb on - strand, within ECD_00669 at 700.945 kb on + strand, within ECD_00669 at 700.945 kb on + strand, within ECD_00669 at 700.946 kb on - strand, within ECD_00669 at 700.960 kb on + strand, within ECD_00669 at 700.971 kb on + strand, within ECD_00669 at 700.989 kb on - strand at 700.989 kb on - strand at 701.001 kb on + strand at 701.086 kb on + strand at 701.151 kb on + strand at 701.308 kb on + strand at 701.351 kb on - strand at 701.363 kb on + strand at 701.364 kb on - strand at 701.447 kb on + strand at 701.586 kb on + strand, within ECD_00670 at 701.638 kb on + strand, within ECD_00670 at 701.846 kb on + strand, within ECD_00670 at 701.847 kb on - strand, within ECD_00670 at 702.021 kb on + strand, within ECD_00670 at 702.593 kb on + strand, within ECD_00671 at 702.593 kb on + strand, within ECD_00671 at 702.593 kb on + strand, within ECD_00671 at 702.593 kb on + strand, within ECD_00671 at 702.594 kb on - strand, within ECD_00671 at 702.623 kb on + strand, within ECD_00671 at 702.758 kb on + strand at 702.758 kb on + strand at 702.758 kb on + strand at 702.758 kb on + strand at 702.761 kb on + strand at 702.788 kb on + strand at 702.834 kb on + strand at 702.834 kb on + strand at 702.834 kb on + strand at 702.834 kb on + strand at 702.834 kb on + strand at 702.834 kb on + strand at 702.835 kb on - strand at 702.835 kb on - strand at 702.836 kb on + strand at 703.055 kb on + strand, within ECD_00672 at 703.055 kb on + strand, within ECD_00672 at 703.112 kb on + strand, within ECD_00672
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 700,401 + ECD_00669 0.51 +0.4 700,539 - ECD_00669 0.61 -0.2 700,664 + ECD_00669 0.69 +0.6 700,667 + ECD_00669 0.69 +0.2 700,667 + ECD_00669 0.69 -0.7 700,668 - ECD_00669 0.69 +0.4 700,690 + ECD_00669 0.71 +0.9 700,691 - ECD_00669 0.71 +0.2 700,691 - ECD_00669 0.71 -0.4 700,691 - ECD_00669 0.71 -0.3 700,691 - ECD_00669 0.71 -1.3 700,769 + ECD_00669 0.76 -0.1 700,794 - ECD_00669 0.78 +0.6 700,811 - ECD_00669 0.79 -0.2 700,945 + ECD_00669 0.88 +0.6 700,945 + ECD_00669 0.88 +0.5 700,946 - ECD_00669 0.88 +0.3 700,960 + ECD_00669 0.89 -0.4 700,971 + ECD_00669 0.90 -1.2 700,989 - +0.4 700,989 - -0.4 701,001 + +0.6 701,086 + -0.2 701,151 + -0.1 701,308 + -0.4 701,351 - +0.6 701,363 + +0.8 701,364 - +1.5 701,447 + +0.6 701,586 + ECD_00670 0.26 +0.3 701,638 + ECD_00670 0.33 +0.2 701,846 + ECD_00670 0.61 -0.7 701,847 - ECD_00670 0.61 -1.5 702,021 + ECD_00670 0.85 -1.8 702,593 + ECD_00671 0.66 -1.6 702,593 + ECD_00671 0.66 -2.1 702,593 + ECD_00671 0.66 -0.6 702,593 + ECD_00671 0.66 -0.4 702,594 - ECD_00671 0.67 -0.5 702,623 + ECD_00671 0.71 +0.4 702,758 + +0.2 702,758 + -0.4 702,758 + -0.9 702,758 + -0.9 702,761 + +0.8 702,788 + -0.9 702,834 + -2.3 702,834 + -0.9 702,834 + +0.1 702,834 + +1.4 702,834 + -0.8 702,834 + -0.4 702,835 - -0.8 702,835 - -0.3 702,836 + +0.2 703,055 + ECD_00672 0.27 +0.7 703,055 + ECD_00672 0.27 -0.2 703,112 + ECD_00672 0.33 +0.8
Or see this region's nucleotide sequence