Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00631 and ECD_00632 are separated by 396 nucleotides ECD_00632 and ECD_00633 are separated by 47 nucleotides
ECD_00631: ECD_00631 - asparagine synthetase B, at 657,387 to 659,051
_00631
ECD_00632: ECD_00632 - UMP phosphatase, at 659,448 to 660,200
_00632
ECD_00633: ECD_00633 - N-acetylglucosamine-inducible nag divergent operon transcriptional repressor, at 660,248 to 661,468
_00633
Position (kb) 659
660
661 Strain fitness (log2 ratio) -1
0
1
2 at 658.480 kb on + strand, within ECD_00631 at 658.481 kb on - strand, within ECD_00631 at 658.514 kb on - strand, within ECD_00631 at 658.583 kb on - strand, within ECD_00631 at 658.583 kb on - strand, within ECD_00631 at 658.583 kb on - strand, within ECD_00631 at 658.612 kb on + strand, within ECD_00631 at 658.612 kb on + strand, within ECD_00631 at 658.612 kb on + strand, within ECD_00631 at 658.612 kb on + strand, within ECD_00631 at 658.612 kb on + strand, within ECD_00631 at 658.613 kb on - strand, within ECD_00631 at 658.613 kb on - strand, within ECD_00631 at 658.613 kb on - strand, within ECD_00631 at 658.861 kb on + strand, within ECD_00631 at 658.862 kb on - strand, within ECD_00631 at 658.998 kb on - strand at 659.051 kb on + strand at 659.051 kb on + strand at 659.051 kb on + strand at 659.051 kb on + strand at 659.052 kb on - strand at 659.354 kb on - strand at 659.446 kb on - strand at 659.446 kb on - strand at 659.454 kb on - strand at 659.480 kb on - strand at 659.683 kb on + strand, within ECD_00632 at 659.684 kb on - strand, within ECD_00632 at 659.684 kb on - strand, within ECD_00632 at 659.684 kb on - strand, within ECD_00632 at 659.806 kb on + strand, within ECD_00632 at 659.807 kb on - strand, within ECD_00632 at 659.807 kb on - strand, within ECD_00632 at 659.817 kb on - strand, within ECD_00632 at 659.836 kb on + strand, within ECD_00632 at 659.837 kb on - strand, within ECD_00632 at 659.885 kb on + strand, within ECD_00632 at 659.938 kb on + strand, within ECD_00632 at 659.994 kb on - strand, within ECD_00632 at 659.994 kb on - strand, within ECD_00632 at 659.996 kb on - strand, within ECD_00632 at 660.013 kb on - strand, within ECD_00632 at 660.071 kb on - strand, within ECD_00632 at 660.149 kb on + strand at 660.227 kb on - strand at 660.348 kb on - strand at 660.362 kb on - strand at 660.519 kb on + strand, within ECD_00633 at 660.519 kb on + strand, within ECD_00633 at 660.519 kb on + strand, within ECD_00633 at 660.911 kb on - strand, within ECD_00633 at 660.933 kb on - strand, within ECD_00633 at 661.050 kb on + strand, within ECD_00633 at 661.055 kb on - strand, within ECD_00633 at 661.150 kb on + strand, within ECD_00633
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 658,480 + ECD_00631 0.66 +0.5 658,481 - ECD_00631 0.66 -0.1 658,514 - ECD_00631 0.68 -0.2 658,583 - ECD_00631 0.72 -0.2 658,583 - ECD_00631 0.72 +0.5 658,583 - ECD_00631 0.72 -0.6 658,612 + ECD_00631 0.74 +1.1 658,612 + ECD_00631 0.74 +0.5 658,612 + ECD_00631 0.74 -1.0 658,612 + ECD_00631 0.74 +0.5 658,612 + ECD_00631 0.74 +0.6 658,613 - ECD_00631 0.74 -0.1 658,613 - ECD_00631 0.74 +0.0 658,613 - ECD_00631 0.74 +0.2 658,861 + ECD_00631 0.89 +0.7 658,862 - ECD_00631 0.89 +0.1 658,998 - +0.0 659,051 + -1.7 659,051 + -0.4 659,051 + -0.4 659,051 + +0.4 659,052 - -0.6 659,354 - -0.4 659,446 - -0.7 659,446 - +0.4 659,454 - -0.4 659,480 - +0.3 659,683 + ECD_00632 0.31 -1.0 659,684 - ECD_00632 0.31 -0.3 659,684 - ECD_00632 0.31 -0.5 659,684 - ECD_00632 0.31 -1.3 659,806 + ECD_00632 0.48 -0.9 659,807 - ECD_00632 0.48 -0.8 659,807 - ECD_00632 0.48 +0.0 659,817 - ECD_00632 0.49 -0.7 659,836 + ECD_00632 0.52 -0.6 659,837 - ECD_00632 0.52 -0.6 659,885 + ECD_00632 0.58 +0.2 659,938 + ECD_00632 0.65 +0.2 659,994 - ECD_00632 0.73 -0.6 659,994 - ECD_00632 0.73 +0.0 659,996 - ECD_00632 0.73 +1.2 660,013 - ECD_00632 0.75 +0.0 660,071 - ECD_00632 0.83 -0.9 660,149 + -0.8 660,227 - -0.7 660,348 - -0.4 660,362 - +0.5 660,519 + ECD_00633 0.22 +0.4 660,519 + ECD_00633 0.22 -1.7 660,519 + ECD_00633 0.22 +0.5 660,911 - ECD_00633 0.54 +0.6 660,933 - ECD_00633 0.56 -1.5 661,050 + ECD_00633 0.66 +0.1 661,055 - ECD_00633 0.66 +2.2 661,150 + ECD_00633 0.74 -0.4
Or see this region's nucleotide sequence