Experiment: Bas18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00102 and ECD_00103 overlap by 1 nucleotides ECD_00103 and ECD_00104 are separated by 224 nucleotides ECD_00104 and ECD_00105 are separated by 34 nucleotides
ECD_00102: ECD_00102 - FtsZ stabilizer, at 114,661 to 115,404
_00102
ECD_00103: ECD_00103 - dephospho-CoA kinase, at 115,404 to 116,024
_00103
ECD_00104: ECD_00104 - GMP reductase, at 116,249 to 117,292
_00104
ECD_00105: ECD_00105 - assembly protein in type IV pilin biogenesis, transmembrane protein, at 117,327 to 118,529
_00105
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-2
-1
0
1 at 115.357 kb on - strand at 115.357 kb on - strand at 115.357 kb on - strand at 115.373 kb on - strand at 116.014 kb on - strand at 116.014 kb on - strand at 116.014 kb on - strand at 116.014 kb on - strand at 116.014 kb on - strand at 116.114 kb on + strand at 116.128 kb on - strand at 116.187 kb on + strand at 116.188 kb on - strand at 116.223 kb on + strand at 116.223 kb on + strand at 116.223 kb on + strand at 116.224 kb on - strand at 116.255 kb on - strand at 116.484 kb on - strand, within ECD_00104 at 116.629 kb on + strand, within ECD_00104 at 116.724 kb on + strand, within ECD_00104 at 116.724 kb on + strand, within ECD_00104 at 116.724 kb on + strand, within ECD_00104 at 116.724 kb on + strand, within ECD_00104 at 116.724 kb on + strand, within ECD_00104 at 116.725 kb on - strand, within ECD_00104 at 116.725 kb on - strand, within ECD_00104 at 116.806 kb on + strand, within ECD_00104 at 116.806 kb on + strand, within ECD_00104 at 117.118 kb on + strand, within ECD_00104 at 117.119 kb on - strand, within ECD_00104 at 117.119 kb on - strand, within ECD_00104 at 117.196 kb on + strand at 117.196 kb on + strand at 117.196 kb on + strand at 117.200 kb on + strand at 117.200 kb on + strand at 117.200 kb on + strand at 117.200 kb on + strand at 117.200 kb on + strand at 117.200 kb on + strand at 117.200 kb on + strand at 117.200 kb on + strand at 117.200 kb on + strand at 117.200 kb on + strand at 117.200 kb on + strand at 117.200 kb on + strand at 117.201 kb on - strand at 117.355 kb on - strand at 117.374 kb on - strand at 117.398 kb on + strand at 117.499 kb on - strand, within ECD_00105 at 117.679 kb on - strand, within ECD_00105 at 117.784 kb on - strand, within ECD_00105 at 117.784 kb on - strand, within ECD_00105 at 117.805 kb on - strand, within ECD_00105 at 117.805 kb on - strand, within ECD_00105 at 117.805 kb on - strand, within ECD_00105 at 117.805 kb on - strand, within ECD_00105 at 117.806 kb on + strand, within ECD_00105 at 117.807 kb on - strand, within ECD_00105 at 117.954 kb on - strand, within ECD_00105 at 117.955 kb on + strand, within ECD_00105 at 117.955 kb on + strand, within ECD_00105 at 117.955 kb on + strand, within ECD_00105 at 117.956 kb on - strand, within ECD_00105 at 117.956 kb on - strand, within ECD_00105 at 117.956 kb on - strand, within ECD_00105 at 117.956 kb on - strand, within ECD_00105 at 117.956 kb on - strand, within ECD_00105 at 117.956 kb on - strand, within ECD_00105 at 118.041 kb on + strand, within ECD_00105 at 118.170 kb on + strand, within ECD_00105 at 118.185 kb on + strand, within ECD_00105 at 118.189 kb on - strand, within ECD_00105 at 118.189 kb on - strand, within ECD_00105 at 118.189 kb on - strand, within ECD_00105
Per-strain Table
Position Strand Gene LocusTag Fraction Bas18 remove 115,357 - -1.3 115,357 - +0.5 115,357 - +0.2 115,373 - +1.0 116,014 - -0.5 116,014 - -0.9 116,014 - +0.5 116,014 - -0.3 116,014 - +0.6 116,114 + -0.8 116,128 - -0.0 116,187 + -2.1 116,188 - -1.2 116,223 + +0.3 116,223 + +0.0 116,223 + +0.6 116,224 - -0.4 116,255 - +1.4 116,484 - ECD_00104 0.23 -1.6 116,629 + ECD_00104 0.36 +0.7 116,724 + ECD_00104 0.45 -0.2 116,724 + ECD_00104 0.45 -1.1 116,724 + ECD_00104 0.45 -0.7 116,724 + ECD_00104 0.45 -0.4 116,724 + ECD_00104 0.45 -0.6 116,725 - ECD_00104 0.46 -0.0 116,725 - ECD_00104 0.46 +0.8 116,806 + ECD_00104 0.53 -0.0 116,806 + ECD_00104 0.53 -0.9 117,118 + ECD_00104 0.83 -0.7 117,119 - ECD_00104 0.83 -0.5 117,119 - ECD_00104 0.83 -0.2 117,196 + -0.4 117,196 + +0.2 117,196 + +0.5 117,200 + +0.5 117,200 + +1.0 117,200 + +0.5 117,200 + +0.1 117,200 + -0.4 117,200 + +1.7 117,200 + -1.4 117,200 + +0.6 117,200 + +0.4 117,200 + +0.7 117,200 + -0.9 117,200 + +0.1 117,201 - +1.4 117,355 - -0.2 117,374 - -0.5 117,398 + +0.2 117,499 - ECD_00105 0.14 -0.7 117,679 - ECD_00105 0.29 -1.4 117,784 - ECD_00105 0.38 +0.9 117,784 - ECD_00105 0.38 -0.6 117,805 - ECD_00105 0.40 -0.1 117,805 - ECD_00105 0.40 -0.3 117,805 - ECD_00105 0.40 -0.8 117,805 - ECD_00105 0.40 +1.0 117,806 + ECD_00105 0.40 +0.6 117,807 - ECD_00105 0.40 -0.4 117,954 - ECD_00105 0.52 +0.9 117,955 + ECD_00105 0.52 -0.1 117,955 + ECD_00105 0.52 -0.5 117,955 + ECD_00105 0.52 -0.7 117,956 - ECD_00105 0.52 +1.5 117,956 - ECD_00105 0.52 -0.3 117,956 - ECD_00105 0.52 +0.5 117,956 - ECD_00105 0.52 +0.5 117,956 - ECD_00105 0.52 +0.4 117,956 - ECD_00105 0.52 -0.0 118,041 + ECD_00105 0.59 -0.2 118,170 + ECD_00105 0.70 -1.2 118,185 + ECD_00105 0.71 -0.1 118,189 - ECD_00105 0.72 +0.9 118,189 - ECD_00105 0.72 +0.1 118,189 - ECD_00105 0.72 +0.6
Or see this region's nucleotide sequence