Strain Fitness in Escherichia coli BL21 around ECD_00104

Experiment: Bas18

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00102 and ECD_00103 overlap by 1 nucleotidesECD_00103 and ECD_00104 are separated by 224 nucleotidesECD_00104 and ECD_00105 are separated by 34 nucleotides ECD_00102: ECD_00102 - FtsZ stabilizer, at 114,661 to 115,404 _00102 ECD_00103: ECD_00103 - dephospho-CoA kinase, at 115,404 to 116,024 _00103 ECD_00104: ECD_00104 - GMP reductase, at 116,249 to 117,292 _00104 ECD_00105: ECD_00105 - assembly protein in type IV pilin biogenesis, transmembrane protein, at 117,327 to 118,529 _00105 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1at 115.357 kb on - strandat 115.357 kb on - strandat 115.357 kb on - strandat 115.373 kb on - strandat 116.014 kb on - strandat 116.014 kb on - strandat 116.014 kb on - strandat 116.014 kb on - strandat 116.014 kb on - strandat 116.114 kb on + strandat 116.128 kb on - strandat 116.187 kb on + strandat 116.188 kb on - strandat 116.223 kb on + strandat 116.223 kb on + strandat 116.223 kb on + strandat 116.224 kb on - strandat 116.255 kb on - strandat 116.484 kb on - strand, within ECD_00104at 116.629 kb on + strand, within ECD_00104at 116.724 kb on + strand, within ECD_00104at 116.724 kb on + strand, within ECD_00104at 116.724 kb on + strand, within ECD_00104at 116.724 kb on + strand, within ECD_00104at 116.724 kb on + strand, within ECD_00104at 116.725 kb on - strand, within ECD_00104at 116.725 kb on - strand, within ECD_00104at 116.806 kb on + strand, within ECD_00104at 116.806 kb on + strand, within ECD_00104at 117.118 kb on + strand, within ECD_00104at 117.119 kb on - strand, within ECD_00104at 117.119 kb on - strand, within ECD_00104at 117.196 kb on + strandat 117.196 kb on + strandat 117.196 kb on + strandat 117.200 kb on + strandat 117.200 kb on + strandat 117.200 kb on + strandat 117.200 kb on + strandat 117.200 kb on + strandat 117.200 kb on + strandat 117.200 kb on + strandat 117.200 kb on + strandat 117.200 kb on + strandat 117.200 kb on + strandat 117.200 kb on + strandat 117.200 kb on + strandat 117.201 kb on - strandat 117.355 kb on - strandat 117.374 kb on - strandat 117.398 kb on + strandat 117.499 kb on - strand, within ECD_00105at 117.679 kb on - strand, within ECD_00105at 117.784 kb on - strand, within ECD_00105at 117.784 kb on - strand, within ECD_00105at 117.805 kb on - strand, within ECD_00105at 117.805 kb on - strand, within ECD_00105at 117.805 kb on - strand, within ECD_00105at 117.805 kb on - strand, within ECD_00105at 117.806 kb on + strand, within ECD_00105at 117.807 kb on - strand, within ECD_00105at 117.954 kb on - strand, within ECD_00105at 117.955 kb on + strand, within ECD_00105at 117.955 kb on + strand, within ECD_00105at 117.955 kb on + strand, within ECD_00105at 117.956 kb on - strand, within ECD_00105at 117.956 kb on - strand, within ECD_00105at 117.956 kb on - strand, within ECD_00105at 117.956 kb on - strand, within ECD_00105at 117.956 kb on - strand, within ECD_00105at 117.956 kb on - strand, within ECD_00105at 118.041 kb on + strand, within ECD_00105at 118.170 kb on + strand, within ECD_00105at 118.185 kb on + strand, within ECD_00105at 118.189 kb on - strand, within ECD_00105at 118.189 kb on - strand, within ECD_00105at 118.189 kb on - strand, within ECD_00105

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas18
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115,357 - -1.3
115,357 - +0.5
115,357 - +0.2
115,373 - +1.0
116,014 - -0.5
116,014 - -0.9
116,014 - +0.5
116,014 - -0.3
116,014 - +0.6
116,114 + -0.8
116,128 - -0.0
116,187 + -2.1
116,188 - -1.2
116,223 + +0.3
116,223 + +0.0
116,223 + +0.6
116,224 - -0.4
116,255 - +1.4
116,484 - ECD_00104 0.23 -1.6
116,629 + ECD_00104 0.36 +0.7
116,724 + ECD_00104 0.45 -0.2
116,724 + ECD_00104 0.45 -1.1
116,724 + ECD_00104 0.45 -0.7
116,724 + ECD_00104 0.45 -0.4
116,724 + ECD_00104 0.45 -0.6
116,725 - ECD_00104 0.46 -0.0
116,725 - ECD_00104 0.46 +0.8
116,806 + ECD_00104 0.53 -0.0
116,806 + ECD_00104 0.53 -0.9
117,118 + ECD_00104 0.83 -0.7
117,119 - ECD_00104 0.83 -0.5
117,119 - ECD_00104 0.83 -0.2
117,196 + -0.4
117,196 + +0.2
117,196 + +0.5
117,200 + +0.5
117,200 + +1.0
117,200 + +0.5
117,200 + +0.1
117,200 + -0.4
117,200 + +1.7
117,200 + -1.4
117,200 + +0.6
117,200 + +0.4
117,200 + +0.7
117,200 + -0.9
117,200 + +0.1
117,201 - +1.4
117,355 - -0.2
117,374 - -0.5
117,398 + +0.2
117,499 - ECD_00105 0.14 -0.7
117,679 - ECD_00105 0.29 -1.4
117,784 - ECD_00105 0.38 +0.9
117,784 - ECD_00105 0.38 -0.6
117,805 - ECD_00105 0.40 -0.1
117,805 - ECD_00105 0.40 -0.3
117,805 - ECD_00105 0.40 -0.8
117,805 - ECD_00105 0.40 +1.0
117,806 + ECD_00105 0.40 +0.6
117,807 - ECD_00105 0.40 -0.4
117,954 - ECD_00105 0.52 +0.9
117,955 + ECD_00105 0.52 -0.1
117,955 + ECD_00105 0.52 -0.5
117,955 + ECD_00105 0.52 -0.7
117,956 - ECD_00105 0.52 +1.5
117,956 - ECD_00105 0.52 -0.3
117,956 - ECD_00105 0.52 +0.5
117,956 - ECD_00105 0.52 +0.5
117,956 - ECD_00105 0.52 +0.4
117,956 - ECD_00105 0.52 -0.0
118,041 + ECD_00105 0.59 -0.2
118,170 + ECD_00105 0.70 -1.2
118,185 + ECD_00105 0.71 -0.1
118,189 - ECD_00105 0.72 +0.9
118,189 - ECD_00105 0.72 +0.1
118,189 - ECD_00105 0.72 +0.6

Or see this region's nucleotide sequence