Experiment: Growth on radish seeds for 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02645 and PS417_02650 are separated by 179 nucleotides PS417_02650 and PS417_02655 are separated by 374 nucleotides
PS417_02645: PS417_02645 - aldehyde dehydrogenase, at 604,576 to 606,066
_02645
PS417_02650: PS417_02650 - FAD-dependent oxidoreductase, at 606,246 to 607,529
_02650
PS417_02655: PS417_02655 - amino acid ABC transporter substrate-binding protein, at 607,904 to 609,040
_02655
Position (kb) 606
607
608 Strain fitness (log2 ratio) -2
-1
0
1
2 at 605.668 kb on + strand, within PS417_02645 at 605.669 kb on - strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.672 kb on - strand, within PS417_02645 at 605.672 kb on - strand, within PS417_02645 at 605.746 kb on + strand, within PS417_02645 at 605.746 kb on + strand, within PS417_02645 at 605.992 kb on + strand at 606.023 kb on - strand at 606.054 kb on + strand at 606.055 kb on - strand at 606.139 kb on + strand at 606.140 kb on - strand at 606.224 kb on + strand at 606.224 kb on + strand at 606.225 kb on - strand at 606.586 kb on - strand, within PS417_02650 at 606.604 kb on + strand, within PS417_02650 at 606.604 kb on + strand, within PS417_02650 at 606.802 kb on - strand, within PS417_02650 at 606.958 kb on - strand, within PS417_02650 at 607.009 kb on - strand, within PS417_02650 at 607.009 kb on - strand, within PS417_02650 at 607.011 kb on + strand, within PS417_02650 at 607.012 kb on - strand, within PS417_02650 at 607.212 kb on + strand, within PS417_02650 at 607.212 kb on + strand, within PS417_02650 at 607.213 kb on - strand, within PS417_02650 at 607.245 kb on + strand, within PS417_02650 at 607.386 kb on + strand, within PS417_02650 at 607.386 kb on + strand at 607.390 kb on + strand, within PS417_02650 at 607.390 kb on + strand, within PS417_02650 at 607.391 kb on - strand, within PS417_02650 at 607.391 kb on - strand, within PS417_02650 at 607.391 kb on - strand, within PS417_02650 at 607.463 kb on + strand at 607.464 kb on - strand at 607.473 kb on + strand at 607.495 kb on - strand at 607.666 kb on + strand at 607.667 kb on - strand at 607.728 kb on + strand at 607.735 kb on + strand at 607.779 kb on + strand at 607.919 kb on + strand at 608.045 kb on + strand, within PS417_02655 at 608.045 kb on + strand, within PS417_02655 at 608.046 kb on - strand, within PS417_02655 at 608.046 kb on - strand, within PS417_02655 at 608.249 kb on + strand, within PS417_02655 at 608.249 kb on + strand, within PS417_02655 at 608.249 kb on + strand, within PS417_02655 at 608.250 kb on - strand, within PS417_02655 at 608.332 kb on + strand at 608.332 kb on + strand, within PS417_02655 at 608.333 kb on - strand, within PS417_02655 at 608.375 kb on + strand, within PS417_02655 at 608.433 kb on - strand, within PS417_02655
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours remove 605,668 + PS417_02645 0.73 +1.4 605,669 - PS417_02645 0.73 +0.6 605,671 + PS417_02645 0.73 -2.1 605,671 + PS417_02645 0.73 -0.6 605,671 + PS417_02645 0.73 -0.7 605,671 + PS417_02645 0.73 -0.4 605,672 - PS417_02645 0.74 +2.7 605,672 - PS417_02645 0.74 -0.2 605,746 + PS417_02645 0.78 -0.4 605,746 + PS417_02645 0.78 +0.1 605,992 + -1.4 606,023 - +1.0 606,054 + +0.1 606,055 - +1.4 606,139 + +0.4 606,140 - +0.4 606,224 + +0.9 606,224 + -1.5 606,225 - -1.8 606,586 - PS417_02650 0.26 +1.4 606,604 + PS417_02650 0.28 +0.4 606,604 + PS417_02650 0.28 -0.6 606,802 - PS417_02650 0.43 +1.4 606,958 - PS417_02650 0.55 +0.2 607,009 - PS417_02650 0.59 +0.5 607,009 - PS417_02650 0.59 -0.2 607,011 + PS417_02650 0.60 +1.5 607,012 - PS417_02650 0.60 +2.4 607,212 + PS417_02650 0.75 +0.1 607,212 + PS417_02650 0.75 +0.1 607,213 - PS417_02650 0.75 +2.1 607,245 + PS417_02650 0.78 +0.5 607,386 + PS417_02650 0.89 +0.5 607,386 + +1.4 607,390 + PS417_02650 0.89 +0.4 607,390 + PS417_02650 0.89 +0.2 607,391 - PS417_02650 0.89 +0.6 607,391 - PS417_02650 0.89 +0.1 607,391 - PS417_02650 0.89 -0.9 607,463 + +1.0 607,464 - -0.9 607,473 + -0.2 607,495 - +2.4 607,666 + +0.2 607,667 - -1.4 607,728 + +0.4 607,735 + +0.2 607,779 + +0.6 607,919 + -1.4 608,045 + PS417_02655 0.12 -1.2 608,045 + PS417_02655 0.12 -0.9 608,046 - PS417_02655 0.12 +0.1 608,046 - PS417_02655 0.12 +2.1 608,249 + PS417_02655 0.30 +1.4 608,249 + PS417_02655 0.30 -0.5 608,249 + PS417_02655 0.30 +0.4 608,250 - PS417_02655 0.30 -0.4 608,332 + +0.4 608,332 + PS417_02655 0.38 +1.4 608,333 - PS417_02655 0.38 -0.5 608,375 + PS417_02655 0.41 +0.0 608,433 - PS417_02655 0.47 -0.1
Or see this region's nucleotide sequence