Strain Fitness in Pseudomonas simiae WCS417 around PS417_19180

Experiment: Growth on radish seeds for 72 hours

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Growth on radish seeds for 72 hours
4,152,230	+		PS417_19175	0.80	-1.9
4,152,246	+				-0.2
4,152,246	+		PS417_19175	0.81	+0.8
4,152,350	-		PS417_19175	0.83	+0.8
4,152,368	-		PS417_19175	0.83	+1.7
4,152,368	-		PS417_19175	0.83	-0.6
4,152,407	-		PS417_19175	0.84	-1.0
4,152,484	-		PS417_19175	0.86	+1.2
4,152,882	+				+1.0
4,152,882	+				+1.4
4,152,942	+				-0.0
4,152,942	+				-0.7
4,152,993	+				+0.4
4,152,994	-				+0.0
4,152,994	-				+2.3
4,152,994	-				-1.7
4,153,056	+				+1.2
4,153,056	+				-0.2
4,153,057	-				-0.5
4,153,057	-				+0.7
4,153,068	+				+0.6
4,153,069	-				+2.8
4,153,069	-				-0.1
4,153,250	-				+1.1
4,153,309	+				-0.3
4,153,309	+				-0.7
4,153,309	+				+0.4
4,153,310	-				+0.1
4,153,482	-		PS417_19180	0.11	-1.5
4,153,514	+		PS417_19180	0.12	-0.5
4,153,515	-		PS417_19180	0.12	+1.1
4,153,536	+		PS417_19180	0.13	+0.4
4,153,536	+		PS417_19180	0.13	+0.1
4,153,559	-		PS417_19180	0.13	-2.2
4,153,562	+		PS417_19180	0.13	-0.2
4,153,622	+		PS417_19180	0.16	-0.2
4,153,623	-		PS417_19180	0.16	+0.8
4,153,634	-		PS417_19180	0.16	+1.2
4,153,643	+		PS417_19180	0.16	-1.2
4,153,644	-		PS417_19180	0.16	-0.2
4,153,655	-		PS417_19180	0.17	+0.4
4,153,741	+		PS417_19180	0.20	-0.2
4,153,742	-		PS417_19180	0.20	+0.1
4,153,804	+		PS417_19180	0.22	+0.8
4,153,804	+		PS417_19180	0.22	-0.5
4,153,805	-		PS417_19180	0.22	-0.4
4,154,065	+		PS417_19180	0.32	+0.3
4,154,066	-		PS417_19180	0.32	+0.8
4,154,068	+		PS417_19180	0.32	+0.0
4,154,069	-		PS417_19180	0.32	-0.6
4,154,069	-		PS417_19180	0.32	+0.1
4,154,121	-		PS417_19180	0.34	-0.7
4,154,121	-		PS417_19180	0.34	+0.3
4,154,170	+		PS417_19180	0.36	+0.8
4,154,173	+		PS417_19180	0.36	+0.1
4,154,173	+		PS417_19180	0.36	+0.1
4,154,174	-		PS417_19180	0.36	+0.1
4,154,174	-		PS417_19180	0.36	+1.3
4,154,226	-		PS417_19180	0.38	-1.2
4,154,270	+		PS417_19180	0.39	+1.3
4,154,270	+		PS417_19180	0.39	+1.0
4,154,386	+		PS417_19180	0.44	-1.7
4,154,387	-		PS417_19180	0.44	+0.3
4,154,396	+				+2.8
4,154,396	+		PS417_19180	0.44	-1.1
4,154,396	+		PS417_19180	0.44	-2.1
4,154,396	+		PS417_19180	0.44	-0.2
4,154,396	+		PS417_19180	0.44	+1.0
4,154,396	+		PS417_19180	0.44	+1.1
4,154,396	+		PS417_19180	0.44	+0.4
4,154,397	-		PS417_19180	0.44	-0.7
4,154,397	-		PS417_19180	0.44	+0.2
4,154,397	-		PS417_19180	0.44	-0.2
4,154,464	+		PS417_19180	0.46	-0.1
4,154,465	-		PS417_19180	0.47	+0.8
4,154,531	+		PS417_19180	0.49	-0.4
4,154,531	+		PS417_19180	0.49	+0.2
4,154,532	-		PS417_19180	0.49	-1.7
4,154,535	+		PS417_19180	0.49	+1.8
4,154,535	+		PS417_19180	0.49	+0.1
4,154,569	-		PS417_19180	0.50	+0.8
4,154,598	-		PS417_19180	0.51	+0.4
4,154,734	+		PS417_19180	0.56	+0.8
4,154,734	+		PS417_19180	0.56	-0.9
4,154,735	-		PS417_19180	0.56	-0.2
4,154,740	+		PS417_19180	0.57	-0.1
4,154,741	-		PS417_19180	0.57	-1.7
4,154,741	-		PS417_19180	0.57	-0.2
4,154,872	+		PS417_19180	0.61	-2.0
4,154,919	-		PS417_19180	0.63	+0.4
4,154,954	+		PS417_19180	0.64	-0.0
4,154,954	+		PS417_19180	0.64	-0.4
4,154,969	-		PS417_19180	0.65	-0.2
4,154,974	+		PS417_19180	0.65	-0.6
4,154,974	+		PS417_19180	0.65	-1.2
4,154,974	+		PS417_19180	0.65	+1.8
4,154,974	+		PS417_19180	0.65	-0.2
4,154,975	-		PS417_19180	0.65	+0.1
4,154,975	-		PS417_19180	0.65	+0.4
4,155,041	+		PS417_19180	0.68	+1.4
4,155,118	+		PS417_19180	0.70	+1.0
4,155,118	+		PS417_19180	0.70	+0.8
4,155,119	-		PS417_19180	0.70	+2.3
4,155,263	-		PS417_19180	0.76	+0.8
4,155,280	+		PS417_19180	0.76	-0.5
4,155,295	-		PS417_19180	0.77	-0.2
4,155,487	+		PS417_19180	0.84	+0.8
4,155,487	+		PS417_19180	0.84	-0.7
4,155,488	-		PS417_19180	0.84	-1.5
4,155,568	+		PS417_19180	0.87	+1.4
4,155,568	+		PS417_19180	0.87	-0.7
4,155,569	-		PS417_19180	0.87	-1.2
4,155,569	-				-0.7
4,155,574	+		PS417_19180	0.87	-1.3
4,155,575	-		PS417_19180	0.87	-0.9
4,155,695	-				-1.0
4,155,809	+				-0.6
4,155,809	+				-0.7
4,155,847	+				+0.5
4,155,902	+				-0.6
4,155,902	+				-2.2
4,155,902	+				+1.4
4,155,903	-				+0.6
4,155,903	-				-1.5
4,155,931	+				-0.7
4,155,932	-				-1.2
4,155,944	-				+0.8
4,155,964	+				+0.3
4,155,965	-				-0.5
4,155,970	+				+0.8
4,155,971	-				-0.2
4,155,971	-				-0.5
4,155,971	-				+1.0
4,156,004	+				+0.1
4,156,004	+				-1.0
4,156,004	+				-0.2
4,156,004	+				+0.2
4,156,004	+				-0.4
4,156,015	+				+0.3
4,156,017	+				+0.1
4,156,018	-				-0.6
4,156,018	-				+0.6
4,156,061	-				+0.4
4,156,404	+		PS417_19185	0.12	-1.2
4,156,413	-		PS417_19185	0.12	+1.2
4,156,413	-		PS417_19185	0.12	+0.8
4,156,492	-		PS417_19185	0.15	-0.7
4,156,611	-		PS417_19185	0.19	-1.0
4,156,611	-		PS417_19185	0.19	-1.7
4,156,611	-		PS417_19185	0.19	-0.5
4,156,611	-		PS417_19185	0.19	+0.4
4,156,690	+		PS417_19185	0.21	-0.6
4,156,774	+		PS417_19185	0.24	-0.2
4,156,774	+		PS417_19185	0.24	+0.7
4,156,774	+		PS417_19185	0.24	+0.3
4,156,774	+		PS417_19185	0.24	+0.8
4,156,774	+		PS417_19185	0.24	-0.2
4,156,774	+		PS417_19185	0.24	+0.5
4,156,775	-		PS417_19185	0.24	-0.2
4,156,775	-		PS417_19185	0.24	+0.3
4,156,775	-		PS417_19185	0.24	+0.4
4,156,885	+		PS417_19185	0.28	+1.5
4,156,886	-		PS417_19185	0.28	-0.9
4,156,886	-		PS417_19185	0.28	+0.0
4,156,899	+		PS417_19185	0.28	+0.3
4,156,899	+		PS417_19185	0.28	-0.0
4,156,899	+		PS417_19185	0.28	-0.9
4,156,899	+		PS417_19185	0.28	-2.2
4,156,899	+		PS417_19185	0.28	+2.9
4,156,900	-		PS417_19185	0.28	-0.7
4,156,900	-		PS417_19185	0.28	-0.2
4,156,900	-		PS417_19185	0.28	-1.0
4,156,900	-		PS417_19185	0.28	-0.4
4,156,900	-		PS417_19185	0.28	+0.8
4,156,900	-		PS417_19185	0.28	+0.3
4,156,900	-		PS417_19185	0.28	-0.3
4,156,900	-		PS417_19185	0.28	-2.5