Strain Fitness in Pseudomonas simiae WCS417 around PS417_00860

Experiment: Growth on radish seeds for 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00855 and PS417_00860 are separated by 92 nucleotidesPS417_00860 and PS417_00865 overlap by 4 nucleotidesPS417_00865 and PS417_00870 overlap by 4 nucleotides PS417_00850: PS417_00850 - hypothetical protein, at 190,575 to 190,763 _00850 PS417_00855: PS417_00855 - chromosome segregation protein SMC, at 190,726 to 191,670 _00855 PS417_00860: PS417_00860 - hypothetical protein, at 191,763 to 194,669 _00860 PS417_00865: PS417_00865 - hypothetical protein, at 194,666 to 194,938 _00865 PS417_00870: PS417_00870 - hypothetical protein, at 194,935 to 195,219 _00870 Position (kb) 191 192 193 194 195Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 190.856 kb on + strand, within PS417_00855at 190.942 kb on + strand, within PS417_00855at 190.990 kb on + strand, within PS417_00855at 191.076 kb on + strand, within PS417_00855at 191.102 kb on + strand, within PS417_00855at 191.102 kb on + strand, within PS417_00855at 191.102 kb on + strand, within PS417_00855at 191.102 kb on + strand, within PS417_00855at 191.106 kb on + strand, within PS417_00855at 191.110 kb on + strand, within PS417_00855at 191.110 kb on + strand, within PS417_00855at 191.163 kb on + strand, within PS417_00855at 191.164 kb on - strand, within PS417_00855at 191.470 kb on + strand, within PS417_00855at 191.470 kb on + strand, within PS417_00855at 191.470 kb on + strand, within PS417_00855at 191.470 kb on + strand, within PS417_00855at 191.474 kb on - strand, within PS417_00855at 191.608 kb on + strandat 191.676 kb on + strandat 191.677 kb on - strandat 191.807 kb on + strandat 191.815 kb on + strandat 191.815 kb on + strandat 191.815 kb on + strandat 191.816 kb on - strandat 191.886 kb on + strandat 191.886 kb on + strandat 191.886 kb on + strandat 191.971 kb on + strandat 191.971 kb on + strandat 191.974 kb on + strandat 191.975 kb on - strandat 191.975 kb on - strandat 192.449 kb on - strand, within PS417_00860at 192.564 kb on + strand, within PS417_00860at 192.724 kb on + strand, within PS417_00860at 192.724 kb on + strand, within PS417_00860at 192.725 kb on - strand, within PS417_00860at 192.725 kb on - strand, within PS417_00860at 192.725 kb on - strand, within PS417_00860at 192.862 kb on + strand, within PS417_00860at 192.917 kb on - strand, within PS417_00860at 193.090 kb on + strand, within PS417_00860at 193.091 kb on - strand, within PS417_00860at 193.091 kb on - strand, within PS417_00860at 193.210 kb on + strand, within PS417_00860at 193.210 kb on + strand, within PS417_00860at 193.210 kb on + strand, within PS417_00860at 193.211 kb on - strand, within PS417_00860at 193.218 kb on + strand, within PS417_00860at 193.219 kb on - strand, within PS417_00860at 193.219 kb on - strand, within PS417_00860at 193.420 kb on - strand, within PS417_00860at 194.207 kb on - strand, within PS417_00860at 194.536 kb on + strandat 194.536 kb on + strandat 194.537 kb on - strandat 194.537 kb on - strandat 194.739 kb on + strand, within PS417_00865at 194.740 kb on - strand, within PS417_00865at 194.740 kb on - strand, within PS417_00865at 194.741 kb on + strand, within PS417_00865at 194.741 kb on + strand, within PS417_00865at 194.742 kb on - strand, within PS417_00865at 194.742 kb on - strand, within PS417_00865at 194.742 kb on - strand, within PS417_00865at 195.121 kb on + strand, within PS417_00870at 195.121 kb on + strand, within PS417_00870at 195.122 kb on - strand, within PS417_00870at 195.172 kb on - strand, within PS417_00870at 195.272 kb on - strandat 195.309 kb on + strandat 195.309 kb on + strandat 195.309 kb on + strandat 195.309 kb on + strandat 195.310 kb on - strandat 195.310 kb on - strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.374 kb on + strandat 195.375 kb on - strandat 195.375 kb on - strandat 195.375 kb on - strandat 195.429 kb on + strandat 195.430 kb on - strandat 195.430 kb on - strandat 195.572 kb on + strandat 195.573 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours
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190,856 + PS417_00855 0.14 +0.5
190,942 + PS417_00855 0.23 -0.1
190,990 + PS417_00855 0.28 -0.1
191,076 + PS417_00855 0.37 -0.2
191,102 + PS417_00855 0.40 +1.5
191,102 + PS417_00855 0.40 -0.3
191,102 + PS417_00855 0.40 -1.1
191,102 + PS417_00855 0.40 -0.2
191,106 + PS417_00855 0.40 +0.9
191,110 + PS417_00855 0.41 +0.6
191,110 + PS417_00855 0.41 -1.5
191,163 + PS417_00855 0.46 +0.6
191,164 - PS417_00855 0.46 +0.7
191,470 + PS417_00855 0.79 +1.5
191,470 + PS417_00855 0.79 +1.4
191,470 + PS417_00855 0.79 +0.3
191,470 + PS417_00855 0.79 -0.6
191,474 - PS417_00855 0.79 -1.3
191,608 + -0.4
191,676 + -2.5
191,677 - +0.2
191,807 + +0.3
191,815 + +0.2
191,815 + -0.2
191,815 + -0.1
191,816 - +0.7
191,886 + +1.5
191,886 + +1.5
191,886 + -0.1
191,971 + +1.9
191,971 + +0.5
191,974 + +0.5
191,975 - -0.2
191,975 - +0.9
192,449 - PS417_00860 0.24 -0.1
192,564 + PS417_00860 0.28 +0.0
192,724 + PS417_00860 0.33 -0.6
192,724 + PS417_00860 0.33 -1.1
192,725 - PS417_00860 0.33 +0.0
192,725 - PS417_00860 0.33 +1.1
192,725 - PS417_00860 0.33 +0.5
192,862 + PS417_00860 0.38 +0.8
192,917 - PS417_00860 0.40 -0.1
193,090 + PS417_00860 0.46 +1.4
193,091 - PS417_00860 0.46 -1.9
193,091 - PS417_00860 0.46 +1.5
193,210 + PS417_00860 0.50 +0.4
193,210 + PS417_00860 0.50 +2.1
193,210 + PS417_00860 0.50 -0.2
193,211 - PS417_00860 0.50 +0.7
193,218 + PS417_00860 0.50 -0.1
193,219 - PS417_00860 0.50 -0.1
193,219 - PS417_00860 0.50 +0.5
193,420 - PS417_00860 0.57 -0.7
194,207 - PS417_00860 0.84 +2.6
194,536 + +0.1
194,536 + +1.5
194,537 - +0.7
194,537 - -0.3
194,739 + PS417_00865 0.27 -0.0
194,740 - PS417_00865 0.27 -0.1
194,740 - PS417_00865 0.27 +1.5
194,741 + PS417_00865 0.27 -0.1
194,741 + PS417_00865 0.27 +0.6
194,742 - PS417_00865 0.28 +0.0
194,742 - PS417_00865 0.28 -0.1
194,742 - PS417_00865 0.28 +0.3
195,121 + PS417_00870 0.65 +0.8
195,121 + PS417_00870 0.65 +0.4
195,122 - PS417_00870 0.66 +0.9
195,172 - PS417_00870 0.83 +2.3
195,272 - +1.3
195,309 + +0.5
195,309 + +1.2
195,309 + +0.3
195,309 + +0.7
195,310 - +0.4
195,310 - +1.1
195,374 + -0.4
195,374 + -1.3
195,374 + -0.5
195,374 + +0.5
195,374 + -0.8
195,374 + +0.5
195,374 + -1.5
195,374 + +2.9
195,374 + +0.4
195,375 - +0.8
195,375 - -0.8
195,375 - -0.0
195,429 + +0.2
195,430 - +0.1
195,430 - +6.1
195,572 + +0.9
195,573 - +1.5

Or see this region's nucleotide sequence