Experiment: Growth on radish seeds for 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07995 and PS417_08000 are separated by 150 nucleotides PS417_08000 and PS417_08005 are separated by 309 nucleotides
PS417_07995: PS417_07995 - LOG family protein, at 1,748,326 to 1,749,699
_07995
PS417_08000: PS417_08000 - beta-hydroxylase, at 1,749,850 to 1,750,674
_08000
PS417_08005: PS417_08005 - trans-2-enoyl-CoA reductase, at 1,750,984 to 1,752,177
_08005
Position (kb) 1749
1750
1751 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1749.197 kb on + strand, within PS417_07995 at 1749.197 kb on + strand, within PS417_07995 at 1749.197 kb on + strand, within PS417_07995 at 1749.198 kb on - strand, within PS417_07995 at 1749.198 kb on - strand, within PS417_07995 at 1749.198 kb on - strand, within PS417_07995 at 1749.203 kb on + strand, within PS417_07995 at 1749.204 kb on - strand, within PS417_07995 at 1749.269 kb on - strand, within PS417_07995 at 1749.302 kb on + strand, within PS417_07995 at 1749.302 kb on + strand, within PS417_07995 at 1749.303 kb on - strand, within PS417_07995 at 1749.303 kb on - strand, within PS417_07995 at 1749.303 kb on - strand, within PS417_07995 at 1749.303 kb on - strand, within PS417_07995 at 1749.303 kb on - strand, within PS417_07995 at 1749.510 kb on - strand, within PS417_07995 at 1749.583 kb on + strand at 1749.590 kb on + strand at 1749.591 kb on - strand at 1749.591 kb on - strand at 1749.591 kb on - strand at 1749.591 kb on - strand at 1749.791 kb on - strand at 1749.795 kb on - strand at 1749.851 kb on + strand at 1750.036 kb on - strand, within PS417_08000 at 1750.059 kb on - strand, within PS417_08000 at 1750.086 kb on - strand, within PS417_08000 at 1750.086 kb on - strand, within PS417_08000 at 1750.086 kb on - strand, within PS417_08000 at 1750.121 kb on + strand, within PS417_08000 at 1750.122 kb on - strand, within PS417_08000 at 1750.268 kb on + strand, within PS417_08000 at 1750.412 kb on + strand, within PS417_08000 at 1750.412 kb on + strand, within PS417_08000 at 1750.412 kb on + strand, within PS417_08000 at 1750.413 kb on - strand, within PS417_08000 at 1750.413 kb on - strand, within PS417_08000 at 1750.413 kb on - strand, within PS417_08000 at 1750.523 kb on + strand, within PS417_08000 at 1750.524 kb on - strand, within PS417_08000 at 1750.551 kb on + strand, within PS417_08000 at 1750.552 kb on - strand, within PS417_08000 at 1750.579 kb on + strand, within PS417_08000 at 1750.579 kb on + strand, within PS417_08000 at 1750.579 kb on + strand, within PS417_08000 at 1750.580 kb on - strand, within PS417_08000 at 1750.602 kb on + strand at 1750.602 kb on + strand at 1750.602 kb on + strand at 1750.602 kb on + strand at 1750.603 kb on - strand at 1750.603 kb on - strand at 1750.603 kb on - strand at 1750.654 kb on - strand at 1750.770 kb on - strand at 1750.770 kb on - strand at 1750.834 kb on + strand at 1750.834 kb on + strand at 1750.916 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours remove 1,749,197 + PS417_07995 0.63 -1.7 1,749,197 + PS417_07995 0.63 +0.4 1,749,197 + PS417_07995 0.63 +0.9 1,749,198 - PS417_07995 0.63 -0.1 1,749,198 - PS417_07995 0.63 +0.9 1,749,198 - PS417_07995 0.63 -1.1 1,749,203 + PS417_07995 0.64 +1.4 1,749,204 - PS417_07995 0.64 -1.1 1,749,269 - PS417_07995 0.69 +1.9 1,749,302 + PS417_07995 0.71 -1.1 1,749,302 + PS417_07995 0.71 -0.1 1,749,303 - PS417_07995 0.71 +0.9 1,749,303 - PS417_07995 0.71 -0.5 1,749,303 - PS417_07995 0.71 +2.0 1,749,303 - PS417_07995 0.71 -1.0 1,749,303 - PS417_07995 0.71 -0.1 1,749,510 - PS417_07995 0.86 -2.0 1,749,583 + +0.9 1,749,590 + -0.5 1,749,591 - +0.7 1,749,591 - -0.1 1,749,591 - +0.9 1,749,591 - +0.3 1,749,791 - -0.5 1,749,795 - +1.4 1,749,851 + +1.4 1,750,036 - PS417_08000 0.23 -2.1 1,750,059 - PS417_08000 0.25 -0.7 1,750,086 - PS417_08000 0.29 +0.6 1,750,086 - PS417_08000 0.29 -0.1 1,750,086 - PS417_08000 0.29 +0.9 1,750,121 + PS417_08000 0.33 -1.1 1,750,122 - PS417_08000 0.33 +0.9 1,750,268 + PS417_08000 0.51 +1.3 1,750,412 + PS417_08000 0.68 +1.7 1,750,412 + PS417_08000 0.68 -0.1 1,750,412 + PS417_08000 0.68 -1.1 1,750,413 - PS417_08000 0.68 +1.7 1,750,413 - PS417_08000 0.68 +1.4 1,750,413 - PS417_08000 0.68 -0.1 1,750,523 + PS417_08000 0.82 -0.6 1,750,524 - PS417_08000 0.82 +1.5 1,750,551 + PS417_08000 0.85 -1.0 1,750,552 - PS417_08000 0.85 +2.0 1,750,579 + PS417_08000 0.88 +2.7 1,750,579 + PS417_08000 0.88 -0.7 1,750,579 + PS417_08000 0.88 -0.5 1,750,580 - PS417_08000 0.88 -0.7 1,750,602 + -0.8 1,750,602 + -0.1 1,750,602 + +0.9 1,750,602 + -0.9 1,750,603 - -1.4 1,750,603 - -2.1 1,750,603 - -0.1 1,750,654 - -0.6 1,750,770 - -1.1 1,750,770 - +2.4 1,750,834 + -1.7 1,750,834 + +1.9 1,750,916 + +1.1
Or see this region's nucleotide sequence