Strain Fitness in Pseudomonas simiae WCS417 around PS417_07525

Experiment: Growth on radish seeds for 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07520 and PS417_07525 are separated by 134 nucleotidesPS417_07525 and PS417_07530 are separated by 13 nucleotides PS417_07520: PS417_07520 - 23S rRNA methyltransferase, at 1,654,257 to 1,655,333 _07520 PS417_07525: PS417_07525 - sulfurtransferase, at 1,655,468 to 1,655,719 _07525 PS417_07530: PS417_07530 - multidrug transporter, at 1,655,733 to 1,657,127 _07530 Position (kb) 1655 1656Strain fitness (log2 ratio) -2 -1 0 1 2at 1655.028 kb on - strand, within PS417_07520at 1655.262 kb on + strandat 1655.390 kb on + strandat 1655.390 kb on + strandat 1655.390 kb on + strandat 1655.390 kb on + strandat 1655.391 kb on - strandat 1655.404 kb on + strandat 1655.467 kb on + strandat 1655.467 kb on + strandat 1656.070 kb on + strand, within PS417_07530at 1656.071 kb on - strand, within PS417_07530at 1656.127 kb on + strand, within PS417_07530at 1656.127 kb on + strand, within PS417_07530at 1656.128 kb on - strand, within PS417_07530at 1656.235 kb on + strand, within PS417_07530at 1656.387 kb on + strand, within PS417_07530at 1656.387 kb on + strand, within PS417_07530at 1656.387 kb on + strand, within PS417_07530at 1656.430 kb on + strand, within PS417_07530at 1656.430 kb on + strand, within PS417_07530at 1656.430 kb on + strandat 1656.430 kb on + strand, within PS417_07530at 1656.448 kb on + strand, within PS417_07530at 1656.562 kb on + strand, within PS417_07530at 1656.574 kb on + strandat 1656.667 kb on + strand, within PS417_07530at 1656.667 kb on + strand, within PS417_07530at 1656.668 kb on - strand, within PS417_07530at 1656.670 kb on + strand, within PS417_07530at 1656.671 kb on - strand, within PS417_07530at 1656.713 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours
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1,655,028 - PS417_07520 0.72 -0.5
1,655,262 + +0.9
1,655,390 + -0.5
1,655,390 + +0.6
1,655,390 + -1.5
1,655,390 + -1.1
1,655,391 - -0.7
1,655,404 + +0.9
1,655,467 + -1.9
1,655,467 + -1.0
1,656,070 + PS417_07530 0.24 -0.5
1,656,071 - PS417_07530 0.24 +1.2
1,656,127 + PS417_07530 0.28 -0.3
1,656,127 + PS417_07530 0.28 -0.7
1,656,128 - PS417_07530 0.28 -2.2
1,656,235 + PS417_07530 0.36 -0.2
1,656,387 + PS417_07530 0.47 -1.5
1,656,387 + PS417_07530 0.47 -1.1
1,656,387 + PS417_07530 0.47 +1.9
1,656,430 + PS417_07530 0.50 -0.7
1,656,430 + PS417_07530 0.50 -0.1
1,656,430 + -0.7
1,656,430 + PS417_07530 0.50 +0.1
1,656,448 + PS417_07530 0.51 -0.9
1,656,562 + PS417_07530 0.59 -0.6
1,656,574 + +0.9
1,656,667 + PS417_07530 0.67 -1.5
1,656,667 + PS417_07530 0.67 +0.2
1,656,668 - PS417_07530 0.67 -0.5
1,656,670 + PS417_07530 0.67 -0.6
1,656,671 - PS417_07530 0.67 -0.6
1,656,713 - -0.1

Or see this region's nucleotide sequence