Strain Fitness in Escherichia coli BW25113 around b3961

Experiment: LB Anaerobic with Hygromycin B 0.00025 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB Anaerobic with Hygromycin B 0.00025 mM
4,155,619	-	argH	b3960	0.54	+0.4
4,155,699	-	argH	b3960	0.60	-0.4
4,155,699	-	argH	b3960	0.60	+0.0
4,155,713	-	argH	b3960	0.61	-1.4
4,155,713	-	argH	b3960	0.61	+0.7
4,155,767	+	argH	b3960	0.65	+0.4
4,155,767	+	argH	b3960	0.65	-0.6
4,155,770	-	argH	b3960	0.65	+0.4
4,155,770	-	argH	b3960	0.65	-0.3
4,155,865	+	argH	b3960	0.72	-0.4
4,155,875	+	argH	b3960	0.73	-0.4
4,155,876	+	argH	b3960	0.73	+0.8
4,155,883	-	argH	b3960	0.74	+1.0
4,155,885	+	argH	b3960	0.74	+1.4
4,155,885	+	argH	b3960	0.74	-0.6
4,155,958	+	argH	b3960	0.79	-0.2
4,155,961	-	argH	b3960	0.79	-0.1
4,156,012	+	argH	b3960	0.83	-0.3
4,156,024	+	argH	b3960	0.84	-0.4
4,156,024	+	argH	b3960	0.84	-0.1
4,156,034	-	argH	b3960	0.84	-0.0
4,156,046	+	argH	b3960	0.85	-0.7
4,156,054	-	argH	b3960	0.86	+1.5
4,156,117	+				+0.8
4,156,156	+				-0.4
4,156,156	+				+0.2
4,156,196	+				+1.3
4,156,196	+				+0.7
4,156,215	-				+0.3
4,156,235	+				-0.1
4,156,239	-				-0.3
4,156,322	-	oxyS	b4458	0.13	+0.2
4,156,322	-	oxyS	b4458	0.13	-1.0
4,156,476	-				-0.6
4,156,476	-				+0.1
4,156,476	-				-0.9
4,156,517	-				+0.5
4,156,555	-				+0.3
4,156,633	-	oxyR	b3961	0.13	+0.3
4,156,633	-	oxyR	b3961	0.13	+0.1
4,156,667	+	oxyR	b3961	0.17	+0.1
4,156,703	+	oxyR	b3961	0.21	+0.0
4,156,703	+	oxyR	b3961	0.21	-1.6
4,156,750	-	oxyR	b3961	0.26	-1.0
4,156,757	+	oxyR	b3961	0.27	+0.6
4,156,775	-	oxyR	b3961	0.29	-0.2
4,156,841	+	oxyR	b3961	0.36	+0.3
4,156,841	+	oxyR	b3961	0.36	+0.5
4,156,886	+	oxyR	b3961	0.41	-0.2
4,156,886	+	oxyR	b3961	0.41	+0.8
4,156,899	-	oxyR	b3961	0.42	+0.7
4,156,926	-	oxyR	b3961	0.45	-0.6
4,156,926	-	oxyR	b3961	0.45	-0.5
4,157,000	+	oxyR	b3961	0.53	-0.2
4,157,001	+	oxyR	b3961	0.53	-0.8
4,157,021	+	oxyR	b3961	0.55	-0.8
4,157,031	+	oxyR	b3961	0.56	+0.3
4,157,050	+	oxyR	b3961	0.58	+0.3
4,157,156	+	oxyR	b3961	0.70	-1.0
4,157,166	+	oxyR	b3961	0.71	+0.3
4,157,166	+	oxyR	b3961	0.71	-1.3
4,157,180	+	oxyR	b3961	0.73	-1.0
4,157,204	-	oxyR	b3961	0.75	-0.5
4,157,213	+	oxyR	b3961	0.76	-0.6
4,157,213	+	oxyR	b3961	0.76	+1.2
4,157,230	-	oxyR	b3961	0.78	-0.3
4,157,283	+	oxyR	b3961	0.84	+0.2
4,157,291	-	oxyR	b3961	0.85	-0.6
4,157,330	-	oxyR	b3961	0.89	-0.2
4,157,338	-	oxyR	b3961	0.90	-0.6
4,157,341	+				+0.6
4,157,349	-				-1.6
4,157,354	+				+0.7
4,157,670	-	udhA	b3962	0.18	-0.6
4,157,670	-	udhA	b3962	0.18	+2.0
4,157,759	+	udhA	b3962	0.25	+0.4
4,157,768	-	udhA	b3962	0.25	-0.6
4,157,777	-	udhA	b3962	0.26	-1.8
4,157,793	-	udhA	b3962	0.27	-1.0
4,157,807	+	udhA	b3962	0.28	+0.0
4,157,850	-	udhA	b3962	0.31	+0.0
4,157,860	-	udhA	b3962	0.32	+1.4
4,157,880	-	udhA	b3962	0.33	-0.6
4,157,898	+	udhA	b3962	0.35	+0.3
4,157,898	+	udhA	b3962	0.35	+0.7
4,157,920	-	udhA	b3962	0.36	+1.0
4,157,924	-	udhA	b3962	0.36	+1.0
4,157,924	-	udhA	b3962	0.36	+0.0
4,157,993	+	udhA	b3962	0.41	-0.1
4,158,014	-	udhA	b3962	0.43	+1.0
4,158,055	+	udhA	b3962	0.46	-0.3
4,158,060	+	udhA	b3962	0.46	+0.4
4,158,073	+	udhA	b3962	0.47	-0.8
4,158,079	-	udhA	b3962	0.48	+1.0
4,158,114	+	udhA	b3962	0.50	+1.8
4,158,114	+	udhA	b3962	0.50	+1.6
4,158,128	+	udhA	b3962	0.51	+1.6
4,158,157	+	udhA	b3962	0.53	+1.3
4,158,224	-	udhA	b3962	0.58	-1.3
4,158,248	-	udhA	b3962	0.60	+1.3
4,158,258	+	udhA	b3962	0.60	+0.2
4,158,284	-	udhA	b3962	0.62	-2.0
4,158,343	+	udhA	b3962	0.66	+1.0
4,158,361	+	udhA	b3962	0.68	+0.0
4,158,361	+	udhA	b3962	0.68	+0.0
4,158,366	+	udhA	b3962	0.68	+1.1
4,158,369	-	udhA	b3962	0.68	-1.0
4,158,369	-	udhA	b3962	0.68	+1.3
4,158,371	-	udhA	b3962	0.68	-0.3