Experiment: LB Anaerobic with Amoxicillin 0.0000078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pgk and epd are separated by 49 nucleotides epd and yggC are separated by 284 nucleotides yggC and yggD overlap by 4 nucleotides
b2926: pgk - phosphoglycerate kinase (NCBI), at 3,069,481 to 3,070,644
pgk
b2927: epd - D-erythrose 4-phosphate dehydrogenase (NCBI), at 3,070,694 to 3,071,713
epd
b2928: yggC - hypothetical protein (NCBI), at 3,071,998 to 3,072,711
yggC
b2929: yggD - predicted DNA-binding transcriptional regulator (NCBI), at 3,072,708 to 3,073,217
yggD
Position (kb)
3070
3071
3072 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3070.816 kb on - strand, within epd at 3071.084 kb on - strand at 3071.184 kb on + strand, within epd at 3071.199 kb on - strand, within epd at 3071.204 kb on - strand, within epd at 3071.204 kb on - strand, within epd at 3071.230 kb on + strand, within epd at 3071.230 kb on + strand, within epd at 3071.268 kb on + strand, within epd at 3071.294 kb on + strand at 3071.294 kb on + strand, within epd at 3071.309 kb on + strand, within epd at 3071.450 kb on + strand, within epd at 3071.464 kb on + strand, within epd at 3071.494 kb on + strand, within epd at 3071.536 kb on + strand, within epd at 3071.557 kb on - strand, within epd at 3071.557 kb on - strand, within epd at 3071.600 kb on - strand, within epd at 3071.717 kb on - strand at 3071.763 kb on - strand at 3071.763 kb on - strand at 3071.942 kb on - strand at 3071.946 kb on + strand at 3071.954 kb on - strand at 3072.064 kb on - strand at 3072.064 kb on - strand at 3072.088 kb on - strand, within yggC at 3072.160 kb on - strand, within yggC at 3072.240 kb on - strand, within yggC at 3072.240 kb on - strand, within yggC at 3072.340 kb on + strand, within yggC at 3072.340 kb on + strand, within yggC at 3072.367 kb on - strand, within yggC at 3072.434 kb on - strand, within yggC at 3072.495 kb on + strand, within yggC at 3072.495 kb on + strand, within yggC at 3072.551 kb on + strand, within yggC at 3072.551 kb on + strand, within yggC at 3072.578 kb on + strand, within yggC at 3072.612 kb on - strand, within yggC at 3072.671 kb on + strand at 3072.672 kb on - strand at 3072.695 kb on - strand at 3072.695 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Amoxicillin 0.0000078125 mM remove 3,070,816 - epd b2927 0.12 -1.8 3,071,084 - +0.4 3,071,184 + epd b2927 0.48 +1.9 3,071,199 - epd b2927 0.50 +0.3 3,071,204 - epd b2927 0.50 +1.3 3,071,204 - epd b2927 0.50 -1.0 3,071,230 + epd b2927 0.53 +1.9 3,071,230 + epd b2927 0.53 +0.6 3,071,268 + epd b2927 0.56 +0.1 3,071,294 + +1.4 3,071,294 + epd b2927 0.59 -0.0 3,071,309 + epd b2927 0.60 +1.0 3,071,450 + epd b2927 0.74 +1.9 3,071,464 + epd b2927 0.75 +1.4 3,071,494 + epd b2927 0.78 +2.2 3,071,536 + epd b2927 0.83 +2.0 3,071,557 - epd b2927 0.85 +0.8 3,071,557 - epd b2927 0.85 +0.6 3,071,600 - epd b2927 0.89 +0.4 3,071,717 - -0.1 3,071,763 - -0.1 3,071,763 - +0.7 3,071,942 - +0.6 3,071,946 + +0.1 3,071,954 - -0.1 3,072,064 - -1.0 3,072,064 - +0.4 3,072,088 - yggC b2928 0.13 -1.0 3,072,160 - yggC b2928 0.23 -0.3 3,072,240 - yggC b2928 0.34 -0.2 3,072,240 - yggC b2928 0.34 -1.6 3,072,340 + yggC b2928 0.48 -0.6 3,072,340 + yggC b2928 0.48 +0.0 3,072,367 - yggC b2928 0.52 +0.9 3,072,434 - yggC b2928 0.61 +0.3 3,072,495 + yggC b2928 0.70 -0.1 3,072,495 + yggC b2928 0.70 -0.6 3,072,551 + yggC b2928 0.77 -1.4 3,072,551 + yggC b2928 0.77 -0.3 3,072,578 + yggC b2928 0.81 +0.1 3,072,612 - yggC b2928 0.86 +1.0 3,072,671 + +0.1 3,072,672 - -0.3 3,072,695 - +0.8 3,072,695 - -0.1
Or see this region's nucleotide sequence