Experiment: Growth on radish seeds for 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04005 and PS417_04010 are separated by 479 nucleotides PS417_04010 and PS417_04015 overlap by 4 nucleotides PS417_04015 and PS417_04020 are separated by 11 nucleotides
PS417_04005: PS417_04005 - ornithine decarboxylase, at 899,351 to 900,514
_04005
PS417_04010: PS417_04010 - glycine/betaine ABC transporter ATP-binding protein, at 900,994 to 902,151
_04010
PS417_04015: PS417_04015 - choline ABC transporter permease, at 902,148 to 902,801
_04015
PS417_04020: PS417_04020 - glycine/betaine ABC transporter substrate-binding protein, at 902,813 to 903,709
_04020
Position (kb) 900
901
902
903 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.096 kb on + strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.097 kb on - strand, within PS417_04005 at 900.187 kb on - strand, within PS417_04005 at 900.187 kb on - strand, within PS417_04005 at 900.187 kb on - strand, within PS417_04005 at 900.229 kb on + strand, within PS417_04005 at 900.230 kb on - strand, within PS417_04005 at 900.273 kb on + strand, within PS417_04005 at 900.274 kb on - strand, within PS417_04005 at 900.354 kb on + strand, within PS417_04005 at 900.355 kb on - strand, within PS417_04005 at 900.396 kb on + strand, within PS417_04005 at 900.397 kb on - strand, within PS417_04005 at 900.492 kb on + strand at 900.527 kb on + strand at 900.540 kb on + strand at 900.543 kb on + strand at 900.593 kb on + strand at 900.722 kb on - strand at 900.739 kb on - strand at 900.795 kb on + strand at 900.795 kb on + strand at 900.795 kb on + strand at 900.796 kb on - strand at 900.796 kb on - strand at 900.799 kb on + strand at 900.800 kb on - strand at 900.800 kb on - strand at 900.800 kb on - strand at 900.815 kb on - strand at 900.815 kb on - strand at 900.924 kb on + strand at 900.925 kb on - strand at 900.925 kb on - strand at 900.925 kb on - strand at 900.992 kb on + strand at 900.993 kb on - strand at 901.027 kb on - strand at 901.148 kb on + strand, within PS417_04010 at 901.148 kb on + strand, within PS417_04010 at 901.148 kb on + strand, within PS417_04010 at 901.149 kb on - strand, within PS417_04010 at 901.262 kb on + strand, within PS417_04010 at 901.262 kb on + strand, within PS417_04010 at 901.262 kb on + strand, within PS417_04010 at 901.263 kb on - strand, within PS417_04010 at 901.301 kb on + strand, within PS417_04010 at 901.302 kb on - strand, within PS417_04010 at 901.420 kb on - strand, within PS417_04010 at 901.441 kb on - strand, within PS417_04010 at 902.080 kb on + strand at 902.080 kb on + strand at 902.081 kb on - strand at 902.081 kb on - strand at 902.081 kb on - strand at 902.285 kb on + strand, within PS417_04015 at 902.285 kb on + strand, within PS417_04015 at 902.285 kb on + strand, within PS417_04015 at 902.290 kb on - strand, within PS417_04015 at 902.485 kb on + strand, within PS417_04015 at 902.486 kb on - strand, within PS417_04015 at 902.486 kb on - strand, within PS417_04015 at 902.814 kb on + strand at 903.015 kb on + strand, within PS417_04020 at 903.015 kb on + strand, within PS417_04020 at 903.016 kb on - strand, within PS417_04020 at 903.075 kb on + strand, within PS417_04020 at 903.076 kb on - strand, within PS417_04020
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours remove 900,096 + PS417_04005 0.64 +1.3 900,096 + PS417_04005 0.64 +0.1 900,096 + PS417_04005 0.64 +0.7 900,096 + PS417_04005 0.64 +0.7 900,096 + PS417_04005 0.64 -2.7 900,096 + PS417_04005 0.64 +0.6 900,097 - PS417_04005 0.64 +0.3 900,097 - PS417_04005 0.64 +3.1 900,097 - PS417_04005 0.64 -0.3 900,097 - PS417_04005 0.64 -0.1 900,097 - PS417_04005 0.64 -0.7 900,187 - PS417_04005 0.72 -1.1 900,187 - PS417_04005 0.72 -0.7 900,187 - PS417_04005 0.72 +0.1 900,229 + PS417_04005 0.75 +0.5 900,230 - PS417_04005 0.76 +0.3 900,273 + PS417_04005 0.79 +1.6 900,274 - PS417_04005 0.79 -0.1 900,354 + PS417_04005 0.86 +1.0 900,355 - PS417_04005 0.86 -1.4 900,396 + PS417_04005 0.90 -1.0 900,397 - PS417_04005 0.90 +0.5 900,492 + -1.0 900,527 + -0.3 900,540 + -1.5 900,543 + +1.3 900,593 + -2.0 900,722 - +1.9 900,739 - -0.3 900,795 + -1.2 900,795 + -1.3 900,795 + +0.3 900,796 - +2.9 900,796 - +0.5 900,799 + +1.3 900,800 - +2.7 900,800 - -0.7 900,800 - -0.4 900,815 - +0.7 900,815 - +1.9 900,924 + -0.6 900,925 - +1.3 900,925 - +1.3 900,925 - +1.3 900,992 + +3.3 900,993 - -1.7 901,027 - -0.7 901,148 + PS417_04010 0.13 -0.5 901,148 + PS417_04010 0.13 -0.3 901,148 + PS417_04010 0.13 -3.0 901,149 - PS417_04010 0.13 -1.0 901,262 + PS417_04010 0.23 -0.5 901,262 + PS417_04010 0.23 +1.3 901,262 + PS417_04010 0.23 -0.3 901,263 - PS417_04010 0.23 +0.3 901,301 + PS417_04010 0.27 +0.3 901,302 - PS417_04010 0.27 -2.5 901,420 - PS417_04010 0.37 -1.9 901,441 - PS417_04010 0.39 -1.0 902,080 + -1.1 902,080 + -0.1 902,081 - +0.9 902,081 - +0.3 902,081 - +1.3 902,285 + PS417_04015 0.21 -0.1 902,285 + PS417_04015 0.21 +1.0 902,285 + PS417_04015 0.21 -0.7 902,290 - PS417_04015 0.22 -1.8 902,485 + PS417_04015 0.52 -0.5 902,486 - PS417_04015 0.52 +1.3 902,486 - PS417_04015 0.52 -0.1 902,814 + -0.6 903,015 + PS417_04020 0.23 -1.0 903,015 + PS417_04020 0.23 -0.7 903,016 - PS417_04020 0.23 -1.7 903,075 + PS417_04020 0.29 -1.5 903,076 - PS417_04020 0.29 -0.7
Or see this region's nucleotide sequence