Experiment: Growth on radish seeds for 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03185 and PS417_03190 are separated by 144 nucleotides PS417_03190 and PS417_03195 are separated by 118 nucleotides PS417_03195 and PS417_03200 are separated by 137 nucleotides PS417_03200 and PS417_03205 are separated by 24 nucleotides
PS417_03185: PS417_03185 - NADPH:quinone reductase, at 729,319 to 730,332
_03185
PS417_03190: PS417_03190 - antibiotic biosynthesis monooxygenase, at 730,477 to 730,770
_03190
PS417_03195: PS417_03195 - LysR family transcriptional regulator, at 730,889 to 731,815
_03195
PS417_03200: PS417_03200 - ArsR family transcriptional regulator, at 731,953 to 732,642
_03200
PS417_03205: PS417_03205 - adenine deaminase, at 732,667 to 733,620
_03205
Position (kb) 730
731
732 Strain fitness (log2 ratio) -1
0
1
2 at 729.996 kb on + strand, within PS417_03185 at 729.997 kb on - strand, within PS417_03185 at 729.997 kb on - strand, within PS417_03185 at 730.024 kb on - strand, within PS417_03185 at 730.068 kb on - strand, within PS417_03185 at 730.148 kb on - strand, within PS417_03185 at 730.148 kb on - strand, within PS417_03185 at 730.148 kb on - strand, within PS417_03185 at 730.313 kb on + strand at 730.313 kb on + strand at 730.314 kb on - strand at 730.314 kb on - strand at 730.314 kb on - strand at 730.314 kb on - strand at 730.317 kb on - strand at 730.534 kb on - strand, within PS417_03190 at 730.610 kb on + strand, within PS417_03190 at 730.649 kb on + strand, within PS417_03190 at 730.650 kb on - strand, within PS417_03190 at 730.770 kb on + strand at 730.804 kb on + strand at 730.804 kb on + strand at 730.805 kb on - strand at 730.805 kb on - strand at 730.817 kb on - strand at 730.832 kb on - strand at 730.920 kb on + strand at 730.921 kb on - strand at 730.921 kb on - strand at 730.921 kb on - strand at 731.024 kb on - strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.467 kb on + strand, within PS417_03195 at 731.468 kb on - strand, within PS417_03195 at 731.468 kb on - strand, within PS417_03195 at 731.468 kb on - strand, within PS417_03195 at 731.606 kb on + strand, within PS417_03195 at 731.607 kb on - strand, within PS417_03195 at 731.813 kb on + strand at 731.863 kb on - strand at 731.902 kb on - strand at 731.903 kb on + strand at 731.904 kb on - strand at 731.904 kb on - strand at 731.916 kb on - strand at 732.288 kb on - strand, within PS417_03200 at 732.344 kb on - strand, within PS417_03200 at 732.471 kb on + strand, within PS417_03200 at 732.472 kb on - strand, within PS417_03200 at 732.472 kb on - strand, within PS417_03200 at 732.472 kb on - strand at 732.645 kb on + strand at 732.645 kb on + strand at 732.646 kb on - strand at 732.646 kb on - strand at 732.646 kb on - strand at 732.669 kb on - strand at 732.677 kb on - strand at 732.773 kb on + strand, within PS417_03205
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours remove 729,996 + PS417_03185 0.67 -0.3 729,997 - PS417_03185 0.67 -1.5 729,997 - PS417_03185 0.67 +0.3 730,024 - PS417_03185 0.70 +0.9 730,068 - PS417_03185 0.74 +0.6 730,148 - PS417_03185 0.82 +1.3 730,148 - PS417_03185 0.82 +1.4 730,148 - PS417_03185 0.82 +2.5 730,313 + -0.5 730,313 + -0.9 730,314 - -0.9 730,314 - +0.1 730,314 - +2.3 730,314 - +1.7 730,317 - +1.6 730,534 - PS417_03190 0.19 -0.2 730,610 + PS417_03190 0.45 -0.7 730,649 + PS417_03190 0.59 -0.7 730,650 - PS417_03190 0.59 +2.3 730,770 + -0.3 730,804 + +0.7 730,804 + +1.1 730,805 - +0.0 730,805 - +0.7 730,817 - +1.7 730,832 - -1.3 730,920 + -0.0 730,921 - +0.3 730,921 - -1.0 730,921 - +0.3 731,024 - PS417_03195 0.15 +0.9 731,465 + PS417_03195 0.62 +0.3 731,465 + PS417_03195 0.62 +1.3 731,465 + PS417_03195 0.62 +1.3 731,465 + PS417_03195 0.62 +0.2 731,465 + PS417_03195 0.62 +1.7 731,465 + PS417_03195 0.62 -0.0 731,465 + PS417_03195 0.62 +0.7 731,466 - PS417_03195 0.62 -0.3 731,466 - PS417_03195 0.62 -0.7 731,466 - PS417_03195 0.62 -0.1 731,466 - PS417_03195 0.62 +0.3 731,467 + PS417_03195 0.62 +0.3 731,468 - PS417_03195 0.62 +0.6 731,468 - PS417_03195 0.62 -0.7 731,468 - PS417_03195 0.62 -1.0 731,606 + PS417_03195 0.77 +0.7 731,607 - PS417_03195 0.77 +1.7 731,813 + +1.1 731,863 - +1.1 731,902 - -1.0 731,903 + -1.4 731,904 - +0.0 731,904 - +0.7 731,916 - +1.0 732,288 - PS417_03200 0.49 -0.3 732,344 - PS417_03200 0.57 +0.6 732,471 + PS417_03200 0.75 +0.6 732,472 - PS417_03200 0.75 +0.7 732,472 - PS417_03200 0.75 +1.8 732,472 - +2.3 732,645 + -0.3 732,645 + -1.3 732,646 - +1.3 732,646 - +0.1 732,646 - +0.3 732,669 - -0.3 732,677 - -0.8 732,773 + PS417_03205 0.11 +0.3
Or see this region's nucleotide sequence