Experiment: Growth on radish seeds for 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01780 and PS417_01785 overlap by 4 nucleotides PS417_01785 and PS417_01790 are separated by 266 nucleotides PS417_01790 and PS417_01795 overlap by 8 nucleotides
PS417_01780: PS417_01780 - proline iminopeptidase, at 395,874 to 396,845
_01780
PS417_01785: PS417_01785 - D-tyrosyl-tRNA(Tyr) deacylase, at 396,842 to 397,279
_01785
PS417_01790: PS417_01790 - glucan biosynthesis protein G, at 397,546 to 399,282
_01790
PS417_01795: PS417_01795 - glucosyltransferase MdoH, at 399,275 to 401,845
_01795
Position (kb) 397
398
399
400 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.668 kb on + strand, within PS417_01780 at 396.669 kb on - strand, within PS417_01780 at 396.979 kb on - strand, within PS417_01785 at 396.995 kb on + strand, within PS417_01785 at 397.174 kb on - strand at 397.299 kb on + strand at 397.332 kb on - strand at 397.368 kb on + strand at 397.372 kb on + strand at 397.372 kb on + strand at 397.417 kb on + strand at 397.421 kb on + strand at 397.422 kb on - strand at 397.495 kb on + strand at 397.495 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.502 kb on - strand at 397.554 kb on + strand at 397.708 kb on + strand at 397.766 kb on - strand, within PS417_01790 at 397.912 kb on + strand, within PS417_01790 at 397.912 kb on + strand, within PS417_01790 at 397.913 kb on - strand, within PS417_01790 at 398.087 kb on - strand, within PS417_01790 at 398.350 kb on + strand, within PS417_01790 at 398.351 kb on - strand, within PS417_01790 at 398.351 kb on - strand, within PS417_01790 at 398.351 kb on - strand, within PS417_01790 at 398.389 kb on + strand, within PS417_01790 at 398.576 kb on - strand, within PS417_01790 at 398.576 kb on - strand, within PS417_01790 at 398.576 kb on - strand, within PS417_01790 at 398.869 kb on + strand, within PS417_01790 at 398.870 kb on - strand, within PS417_01790 at 399.259 kb on + strand at 399.259 kb on + strand at 399.259 kb on + strand at 399.280 kb on + strand at 399.281 kb on - strand at 399.315 kb on - strand at 399.328 kb on - strand at 399.657 kb on + strand, within PS417_01795 at 399.658 kb on - strand, within PS417_01795 at 399.749 kb on + strand, within PS417_01795 at 399.750 kb on - strand, within PS417_01795 at 399.840 kb on + strand, within PS417_01795 at 399.958 kb on + strand, within PS417_01795 at 399.958 kb on + strand, within PS417_01795 at 399.959 kb on - strand, within PS417_01795 at 400.144 kb on + strand, within PS417_01795 at 400.144 kb on + strand, within PS417_01795 at 400.144 kb on + strand, within PS417_01795 at 400.227 kb on - strand, within PS417_01795
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours remove 396,570 + PS417_01780 0.72 -0.1 396,570 + PS417_01780 0.72 -1.5 396,570 + PS417_01780 0.72 -0.3 396,668 + PS417_01780 0.82 +0.5 396,669 - PS417_01780 0.82 +2.5 396,979 - PS417_01785 0.31 -1.1 396,995 + PS417_01785 0.35 -0.1 397,174 - +0.5 397,299 + -1.0 397,332 - +0.9 397,368 + +1.5 397,372 + +1.5 397,372 + -1.0 397,417 + -0.1 397,421 + +0.2 397,422 - -1.7 397,495 + +0.1 397,495 + -0.1 397,497 + -2.3 397,497 + +0.5 397,497 + +0.3 397,497 + +0.9 397,497 + +0.2 397,497 + +2.5 397,497 + -0.8 397,497 + +0.1 397,497 + -0.3 397,497 + +0.1 397,497 + -2.7 397,497 + +0.0 397,497 + +0.0 397,498 - -0.5 397,498 - -2.2 397,498 - +0.5 397,498 - -1.9 397,498 - +0.9 397,498 - -1.3 397,498 - -2.2 397,498 - -0.1 397,498 - -1.9 397,498 - -2.5 397,498 - +0.1 397,498 - -1.5 397,498 - -2.1 397,498 - -4.0 397,498 - -1.1 397,498 - -1.7 397,502 - -1.5 397,554 + -2.6 397,708 + -1.7 397,766 - PS417_01790 0.13 -1.1 397,912 + PS417_01790 0.21 -1.9 397,912 + PS417_01790 0.21 -2.7 397,913 - PS417_01790 0.21 -1.2 398,087 - PS417_01790 0.31 -1.3 398,350 + PS417_01790 0.46 +1.0 398,351 - PS417_01790 0.46 +0.5 398,351 - PS417_01790 0.46 -1.5 398,351 - PS417_01790 0.46 -0.9 398,389 + PS417_01790 0.49 -1.1 398,576 - PS417_01790 0.59 -1.5 398,576 - PS417_01790 0.59 -0.9 398,576 - PS417_01790 0.59 -0.1 398,869 + PS417_01790 0.76 -0.7 398,870 - PS417_01790 0.76 -1.1 399,259 + -0.5 399,259 + -0.9 399,259 + +1.5 399,280 + -1.0 399,281 - -2.9 399,315 - +0.5 399,328 - -1.7 399,657 + PS417_01795 0.15 -2.3 399,658 - PS417_01795 0.15 -0.3 399,749 + PS417_01795 0.18 -1.3 399,750 - PS417_01795 0.18 +1.5 399,840 + PS417_01795 0.22 -1.3 399,958 + PS417_01795 0.27 -0.5 399,958 + PS417_01795 0.27 -1.6 399,959 - PS417_01795 0.27 -1.0 400,144 + PS417_01795 0.34 -1.3 400,144 + PS417_01795 0.34 -1.5 400,144 + PS417_01795 0.34 -2.1 400,227 - PS417_01795 0.37 -0.1
Or see this region's nucleotide sequence