Strain Fitness in Pseudomonas simiae WCS417 around PS417_01660

Experiment: Growth on radish seeds for 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01655 and PS417_01660 are separated by 334 nucleotidesPS417_01660 and PS417_01665 are separated by 139 nucleotides PS417_01655: PS417_01655 - glutamine synthetase, at 362,165 to 363,571 _01655 PS417_01660: PS417_01660 - tRNA s(4)U8 sulfurtransferase, at 363,906 to 365,360 _01660 PS417_01665: PS417_01665 - GTP-binding protein TypA, at 365,500 to 367,320 _01665 Position (kb) 363 364 365 366Strain fitness (log2 ratio) -1 0 1at 363.644 kb on - strandat 363.727 kb on + strandat 363.727 kb on + strandat 363.729 kb on + strandat 363.740 kb on + strandat 363.774 kb on + strandat 363.774 kb on + strandat 363.799 kb on + strandat 363.826 kb on + strandat 363.826 kb on + strandat 363.826 kb on + strandat 363.829 kb on + strandat 363.829 kb on + strandat 363.829 kb on + strandat 363.829 kb on + strandat 363.829 kb on + strandat 363.829 kb on + strandat 365.442 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours
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363,644 - +1.5
363,727 + -0.5
363,727 + +1.5
363,729 + -0.5
363,740 + -0.1
363,774 + +0.5
363,774 + -0.9
363,799 + -0.4
363,826 + +0.4
363,826 + +0.6
363,826 + +1.0
363,829 + -0.5
363,829 + +0.5
363,829 + +0.6
363,829 + -0.2
363,829 + +0.2
363,829 + -1.3
365,442 - -0.5

Or see this region's nucleotide sequence