Strain Fitness in Pseudomonas simiae WCS417 around PS417_09380

Experiment: Growth on radish seeds for 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09370 and PS417_09375 overlap by 1 nucleotidesPS417_09375 and PS417_09380 overlap by 4 nucleotidesPS417_09380 and PS417_09385 overlap by 4 nucleotidesPS417_09385 and PS417_09390 are separated by 19 nucleotides PS417_09370: PS417_09370 - metal ABC transporter substrate-binding protein, at 2,032,589 to 2,033,503 _09370 PS417_09375: PS417_09375 - zinc ABC transporter permease, at 2,033,503 to 2,034,402 _09375 PS417_09380: PS417_09380 - manganese ABC transporter ATP-binding protein, at 2,034,399 to 2,035,145 _09380 PS417_09385: PS417_09385 - ABC transporter substrate-binding protein, at 2,035,142 to 2,036,062 _09385 PS417_09390: PS417_09390 - hypothetical protein, at 2,036,082 to 2,036,642 _09390 Position (kb) 2034 2035 2036Strain fitness (log2 ratio) -1 0 1at 2033.886 kb on - strand, within PS417_09375at 2034.649 kb on - strand, within PS417_09380at 2035.566 kb on + strand, within PS417_09385at 2035.933 kb on - strand, within PS417_09385at 2035.939 kb on - strand, within PS417_09385

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours
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2,033,886 - PS417_09375 0.43 +0.2
2,034,649 - PS417_09380 0.33 +0.2
2,035,566 + PS417_09385 0.46 -0.2
2,035,933 - PS417_09385 0.86 +0.8
2,035,939 - PS417_09385 0.87 -0.6

Or see this region's nucleotide sequence