Experiment: Growth on radish seeds for 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00895 and PS417_00900 are separated by 180 nucleotides PS417_00900 and PS417_00905 are separated by 139 nucleotides
PS417_00895: PS417_00895 - succinate-semialdehyde dehydrogenase, at 199,231 to 200,673
_00895
PS417_00900: PS417_00900 - 4-aminobutyrate aminotransferase, at 200,854 to 202,131
_00900
PS417_00905: PS417_00905 - histidine kinase, at 202,271 to 203,479
_00905
Position (kb) 200
201
202
203 Strain fitness (log2 ratio) -2
-1
0
1
2 at 200.043 kb on + strand, within PS417_00895 at 200.074 kb on + strand, within PS417_00895 at 200.074 kb on + strand at 200.074 kb on + strand, within PS417_00895 at 200.117 kb on - strand, within PS417_00895 at 200.134 kb on + strand, within PS417_00895 at 200.135 kb on - strand, within PS417_00895 at 200.473 kb on + strand, within PS417_00895 at 200.473 kb on + strand, within PS417_00895 at 200.473 kb on + strand, within PS417_00895 at 200.474 kb on - strand, within PS417_00895 at 200.474 kb on - strand, within PS417_00895 at 200.479 kb on + strand, within PS417_00895 at 200.653 kb on + strand at 200.653 kb on + strand at 200.653 kb on + strand at 200.653 kb on + strand at 200.654 kb on - strand at 200.809 kb on + strand at 200.809 kb on + strand at 201.103 kb on + strand, within PS417_00900 at 201.112 kb on + strand, within PS417_00900 at 201.112 kb on + strand, within PS417_00900 at 201.710 kb on - strand, within PS417_00900 at 201.748 kb on + strand, within PS417_00900 at 201.749 kb on - strand, within PS417_00900 at 202.129 kb on + strand at 202.217 kb on + strand at 202.238 kb on + strand at 202.296 kb on + strand at 202.679 kb on + strand, within PS417_00905 at 202.679 kb on + strand, within PS417_00905 at 202.940 kb on - strand, within PS417_00905 at 203.117 kb on + strand, within PS417_00905
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours remove 200,043 + PS417_00895 0.56 -0.1 200,074 + PS417_00895 0.58 +0.6 200,074 + +1.5 200,074 + PS417_00895 0.58 -0.1 200,117 - PS417_00895 0.61 +0.1 200,134 + PS417_00895 0.63 +1.6 200,135 - PS417_00895 0.63 +1.5 200,473 + PS417_00895 0.86 -0.1 200,473 + PS417_00895 0.86 -0.1 200,473 + PS417_00895 0.86 -0.7 200,474 - PS417_00895 0.86 -0.8 200,474 - PS417_00895 0.86 -1.0 200,479 + PS417_00895 0.86 -1.9 200,653 + +1.4 200,653 + -0.4 200,653 + +0.7 200,653 + -1.1 200,654 - -0.5 200,809 + -0.8 200,809 + +0.5 201,103 + PS417_00900 0.19 -0.5 201,112 + PS417_00900 0.20 -0.5 201,112 + PS417_00900 0.20 -0.1 201,710 - PS417_00900 0.67 -0.5 201,748 + PS417_00900 0.70 -1.1 201,749 - PS417_00900 0.70 +2.1 202,129 + -1.2 202,217 + -0.1 202,238 + +0.8 202,296 + +0.5 202,679 + PS417_00905 0.34 +0.5 202,679 + PS417_00905 0.34 -0.5 202,940 - PS417_00905 0.55 -0.1 203,117 + PS417_00905 0.70 +0.5
Or see this region's nucleotide sequence