Experiment: LB Anaerobic with Cephalothin 0.0000078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeV and yeeW overlap by 4 nucleotides yeeW and yoeD are separated by 441 nucleotides yoeD and yoeF are separated by 68 nucleotides yoeF and yeeX are separated by 100 nucleotides yeeX and yeeA are separated by 171 nucleotides
b2005: yeeV - CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system (NCBI), at 2,075,593 to 2,075,967
yeeV
b2006: yeeW - CP4-44 prophage; predicted protein (RefSeq), at 2,075,964 to 2,076,131
yeeW
b4642: yoeD - no description, at 2,076,573 to 2,076,701
yoeD
b4538: yoeF - hypothetical protein (RefSeq), at 2,076,770 to 2,076,955
yoeF
b2007: yeeX - conserved protein (RefSeq), at 2,077,056 to 2,077,385
yeeX
b2008: yeeA - conserved inner membrane protein (NCBI), at 2,077,557 to 2,078,615
yeeA
Position (kb)
2076
2077 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2075.827 kb on + strand, within yeeV at 2075.848 kb on - strand, within yeeV at 2075.848 kb on - strand, within yeeV at 2075.933 kb on + strand at 2076.005 kb on + strand, within yeeW at 2076.019 kb on + strand, within yeeW at 2076.019 kb on + strand, within yeeW at 2076.081 kb on + strand, within yeeW at 2076.111 kb on - strand, within yeeW at 2076.111 kb on - strand, within yeeW at 2076.134 kb on + strand at 2076.134 kb on + strand at 2076.161 kb on - strand at 2076.161 kb on - strand at 2076.178 kb on - strand at 2076.184 kb on - strand at 2076.251 kb on + strand at 2076.332 kb on - strand at 2076.415 kb on - strand at 2076.436 kb on + strand at 2076.436 kb on + strand at 2076.462 kb on + strand at 2076.462 kb on + strand at 2076.549 kb on - strand at 2076.611 kb on + strand, within yoeD at 2076.670 kb on - strand, within yoeD at 2076.697 kb on + strand at 2076.881 kb on - strand, within yoeF at 2076.886 kb on - strand, within yoeF at 2076.972 kb on + strand at 2076.973 kb on - strand at 2076.988 kb on + strand at 2077.046 kb on - strand at 2077.046 kb on - strand at 2077.120 kb on + strand, within yeeX at 2077.167 kb on + strand, within yeeX at 2077.185 kb on - strand, within yeeX at 2077.364 kb on - strand at 2077.364 kb on - strand at 2077.393 kb on - strand at 2077.426 kb on - strand at 2077.541 kb on + strand at 2077.541 kb on + strand at 2077.615 kb on + strand at 2077.750 kb on + strand, within yeeA at 2077.753 kb on - strand, within yeeA at 2077.758 kb on - strand, within yeeA at 2077.800 kb on - strand, within yeeA at 2077.858 kb on - strand, within yeeA at 2077.895 kb on + strand, within yeeA at 2077.895 kb on + strand, within yeeA
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Cephalothin 0.0000078125 mM remove 2,075,827 + yeeV b2005 0.62 +0.8 2,075,848 - yeeV b2005 0.68 -0.6 2,075,848 - yeeV b2005 0.68 +0.5 2,075,933 + -0.5 2,076,005 + yeeW b2006 0.24 -0.2 2,076,019 + yeeW b2006 0.33 +0.2 2,076,019 + yeeW b2006 0.33 -0.4 2,076,081 + yeeW b2006 0.70 +0.5 2,076,111 - yeeW b2006 0.88 +1.3 2,076,111 - yeeW b2006 0.88 +1.1 2,076,134 + +0.2 2,076,134 + -0.2 2,076,161 - -0.3 2,076,161 - -0.8 2,076,178 - -0.8 2,076,184 - +0.4 2,076,251 + +0.6 2,076,332 - +0.1 2,076,415 - +0.9 2,076,436 + -2.8 2,076,436 + -1.4 2,076,462 + +0.0 2,076,462 + -0.3 2,076,549 - -1.9 2,076,611 + yoeD b4642 0.29 -0.6 2,076,670 - yoeD b4642 0.75 -2.4 2,076,697 + -1.0 2,076,881 - yoeF b4538 0.60 +2.4 2,076,886 - yoeF b4538 0.62 -2.7 2,076,972 + -1.4 2,076,973 - +0.1 2,076,988 + -0.0 2,077,046 - -1.7 2,077,046 - -1.9 2,077,120 + yeeX b2007 0.19 -1.1 2,077,167 + yeeX b2007 0.34 +1.9 2,077,185 - yeeX b2007 0.39 -0.4 2,077,364 - +0.5 2,077,364 - +0.3 2,077,393 - -0.7 2,077,426 - +0.2 2,077,541 + -0.9 2,077,541 + -0.1 2,077,615 + +0.7 2,077,750 + yeeA b2008 0.18 +0.4 2,077,753 - yeeA b2008 0.19 -0.8 2,077,758 - yeeA b2008 0.19 +0.4 2,077,800 - yeeA b2008 0.23 -0.6 2,077,858 - yeeA b2008 0.28 -0.1 2,077,895 + yeeA b2008 0.32 +3.0 2,077,895 + yeeA b2008 0.32 -0.5
Or see this region's nucleotide sequence