Strain Fitness in Escherichia coli BW25113 around b4538

Experiment: LB Anaerobic with Cephalothin 0.0000078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeeV and yeeW overlap by 4 nucleotidesyeeW and yoeD are separated by 441 nucleotidesyoeD and yoeF are separated by 68 nucleotidesyoeF and yeeX are separated by 100 nucleotidesyeeX and yeeA are separated by 171 nucleotides b2005: yeeV - CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system (NCBI), at 2,075,593 to 2,075,967 yeeV b2006: yeeW - CP4-44 prophage; predicted protein (RefSeq), at 2,075,964 to 2,076,131 yeeW b4642: yoeD - no description, at 2,076,573 to 2,076,701 yoeD b4538: yoeF - hypothetical protein (RefSeq), at 2,076,770 to 2,076,955 yoeF b2007: yeeX - conserved protein (RefSeq), at 2,077,056 to 2,077,385 yeeX b2008: yeeA - conserved inner membrane protein (NCBI), at 2,077,557 to 2,078,615 yeeA Position (kb) 2076 2077Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2075.827 kb on + strand, within yeeVat 2075.848 kb on - strand, within yeeVat 2075.848 kb on - strand, within yeeVat 2075.933 kb on + strandat 2076.005 kb on + strand, within yeeWat 2076.019 kb on + strand, within yeeWat 2076.019 kb on + strand, within yeeWat 2076.081 kb on + strand, within yeeWat 2076.111 kb on - strand, within yeeWat 2076.111 kb on - strand, within yeeWat 2076.134 kb on + strandat 2076.134 kb on + strandat 2076.161 kb on - strandat 2076.161 kb on - strandat 2076.178 kb on - strandat 2076.184 kb on - strandat 2076.251 kb on + strandat 2076.332 kb on - strandat 2076.415 kb on - strandat 2076.436 kb on + strandat 2076.436 kb on + strandat 2076.462 kb on + strandat 2076.462 kb on + strandat 2076.549 kb on - strandat 2076.611 kb on + strand, within yoeDat 2076.670 kb on - strand, within yoeDat 2076.697 kb on + strandat 2076.881 kb on - strand, within yoeFat 2076.886 kb on - strand, within yoeFat 2076.972 kb on + strandat 2076.973 kb on - strandat 2076.988 kb on + strandat 2077.046 kb on - strandat 2077.046 kb on - strandat 2077.120 kb on + strand, within yeeXat 2077.167 kb on + strand, within yeeXat 2077.185 kb on - strand, within yeeXat 2077.364 kb on - strandat 2077.364 kb on - strandat 2077.393 kb on - strandat 2077.426 kb on - strandat 2077.541 kb on + strandat 2077.541 kb on + strandat 2077.615 kb on + strandat 2077.750 kb on + strand, within yeeAat 2077.753 kb on - strand, within yeeAat 2077.758 kb on - strand, within yeeAat 2077.800 kb on - strand, within yeeAat 2077.858 kb on - strand, within yeeAat 2077.895 kb on + strand, within yeeAat 2077.895 kb on + strand, within yeeA

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Cephalothin 0.0000078125 mM
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2,075,827 + yeeV b2005 0.62 +0.8
2,075,848 - yeeV b2005 0.68 -0.6
2,075,848 - yeeV b2005 0.68 +0.5
2,075,933 + -0.5
2,076,005 + yeeW b2006 0.24 -0.2
2,076,019 + yeeW b2006 0.33 +0.2
2,076,019 + yeeW b2006 0.33 -0.4
2,076,081 + yeeW b2006 0.70 +0.5
2,076,111 - yeeW b2006 0.88 +1.3
2,076,111 - yeeW b2006 0.88 +1.1
2,076,134 + +0.2
2,076,134 + -0.2
2,076,161 - -0.3
2,076,161 - -0.8
2,076,178 - -0.8
2,076,184 - +0.4
2,076,251 + +0.6
2,076,332 - +0.1
2,076,415 - +0.9
2,076,436 + -2.8
2,076,436 + -1.4
2,076,462 + +0.0
2,076,462 + -0.3
2,076,549 - -1.9
2,076,611 + yoeD b4642 0.29 -0.6
2,076,670 - yoeD b4642 0.75 -2.4
2,076,697 + -1.0
2,076,881 - yoeF b4538 0.60 +2.4
2,076,886 - yoeF b4538 0.62 -2.7
2,076,972 + -1.4
2,076,973 - +0.1
2,076,988 + -0.0
2,077,046 - -1.7
2,077,046 - -1.9
2,077,120 + yeeX b2007 0.19 -1.1
2,077,167 + yeeX b2007 0.34 +1.9
2,077,185 - yeeX b2007 0.39 -0.4
2,077,364 - +0.5
2,077,364 - +0.3
2,077,393 - -0.7
2,077,426 - +0.2
2,077,541 + -0.9
2,077,541 + -0.1
2,077,615 + +0.7
2,077,750 + yeeA b2008 0.18 +0.4
2,077,753 - yeeA b2008 0.19 -0.8
2,077,758 - yeeA b2008 0.19 +0.4
2,077,800 - yeeA b2008 0.23 -0.6
2,077,858 - yeeA b2008 0.28 -0.1
2,077,895 + yeeA b2008 0.32 +3.0
2,077,895 + yeeA b2008 0.32 -0.5

Or see this region's nucleotide sequence