Strain Fitness in Escherichia coli BW25113 around b2368

Experiment: LB Anaerobic with Cephalothin 0.0000078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntemrY and emrK overlap by 1 nucleotidesemrK and evgA are separated by 415 nucleotides b2367: emrY - predicted multidrug efflux system (NCBI), at 2,478,660 to 2,480,198 emrY b2368: emrK - EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component (NCBI), at 2,480,198 to 2,481,361 emrK b2369: evgA - DNA-binding response regulator in two-component regulatory system with EvgS (NCBI), at 2,481,777 to 2,482,391 evgA Position (kb) 2480 2481 2482Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2479.253 kb on - strand, within emrYat 2479.275 kb on - strand, within emrYat 2479.275 kb on - strand, within emrYat 2479.504 kb on - strand, within emrYat 2479.885 kb on - strand, within emrYat 2479.902 kb on - strand, within emrYat 2480.011 kb on - strand, within emrYat 2480.011 kb on - strand, within emrYat 2480.016 kb on - strand, within emrYat 2480.016 kb on - strand, within emrYat 2480.020 kb on + strand, within emrYat 2480.026 kb on + strand, within emrYat 2480.026 kb on + strand, within emrYat 2480.026 kb on - strand, within emrYat 2480.027 kb on + strand, within emrYat 2480.034 kb on - strand, within emrYat 2480.034 kb on - strand, within emrYat 2480.035 kb on - strand, within emrYat 2480.035 kb on - strand, within emrYat 2480.130 kb on - strandat 2480.136 kb on - strandat 2480.156 kb on - strandat 2480.158 kb on - strandat 2480.163 kb on + strandat 2480.171 kb on - strandat 2480.260 kb on - strandat 2480.260 kb on - strandat 2480.260 kb on - strandat 2480.269 kb on - strandat 2480.269 kb on - strandat 2480.270 kb on - strandat 2480.279 kb on - strandat 2480.290 kb on - strandat 2480.295 kb on - strandat 2480.300 kb on - strandat 2480.301 kb on - strandat 2480.301 kb on - strandat 2480.324 kb on - strand, within emrKat 2480.324 kb on - strand, within emrKat 2480.352 kb on - strand, within emrKat 2480.352 kb on - strand, within emrKat 2480.358 kb on - strand, within emrKat 2480.362 kb on + strand, within emrKat 2480.366 kb on - strand, within emrKat 2480.376 kb on + strand, within emrKat 2480.376 kb on - strand, within emrKat 2480.378 kb on - strand, within emrKat 2480.381 kb on + strand, within emrKat 2480.398 kb on + strand, within emrKat 2480.424 kb on + strand, within emrKat 2480.432 kb on - strand, within emrKat 2480.432 kb on - strand, within emrKat 2480.437 kb on - strand, within emrKat 2480.442 kb on - strand, within emrKat 2480.450 kb on + strand, within emrKat 2480.473 kb on + strand, within emrKat 2480.478 kb on + strand, within emrKat 2480.486 kb on + strand, within emrKat 2480.497 kb on + strand, within emrKat 2480.505 kb on - strand, within emrKat 2480.511 kb on + strand, within emrKat 2480.512 kb on + strand, within emrKat 2480.522 kb on + strand, within emrKat 2480.569 kb on + strand, within emrKat 2480.569 kb on + strand, within emrKat 2480.579 kb on + strand, within emrKat 2480.589 kb on + strand, within emrKat 2480.589 kb on + strand, within emrKat 2480.590 kb on - strand, within emrKat 2480.647 kb on - strand, within emrKat 2480.647 kb on - strand, within emrKat 2480.650 kb on + strand, within emrKat 2480.652 kb on + strand, within emrKat 2480.652 kb on + strand, within emrKat 2480.662 kb on + strand, within emrKat 2480.674 kb on - strand, within emrKat 2480.684 kb on + strand, within emrKat 2480.686 kb on + strand, within emrKat 2480.689 kb on + strand, within emrKat 2480.689 kb on + strand, within emrKat 2480.694 kb on + strand, within emrKat 2480.694 kb on + strand, within emrKat 2480.696 kb on + strand, within emrKat 2480.697 kb on + strand, within emrKat 2480.697 kb on + strand, within emrKat 2480.706 kb on + strand, within emrKat 2480.706 kb on + strand, within emrKat 2480.709 kb on - strand, within emrKat 2480.709 kb on - strand, within emrKat 2480.709 kb on - strand, within emrKat 2480.726 kb on + strand, within emrKat 2480.741 kb on + strand, within emrKat 2480.769 kb on + strandat 2480.769 kb on + strand, within emrKat 2480.782 kb on - strand, within emrKat 2480.787 kb on + strand, within emrKat 2480.801 kb on + strand, within emrKat 2480.801 kb on + strand, within emrKat 2480.843 kb on + strand, within emrKat 2480.843 kb on + strand, within emrKat 2480.843 kb on + strand, within emrKat 2480.843 kb on + strand, within emrKat 2480.889 kb on + strand, within emrKat 2480.897 kb on - strand, within emrKat 2480.990 kb on - strand, within emrKat 2481.080 kb on - strand, within emrKat 2481.221 kb on - strand, within emrKat 2481.434 kb on - strandat 2481.444 kb on - strandat 2481.444 kb on - strandat 2481.450 kb on - strandat 2481.450 kb on - strandat 2481.463 kb on - strandat 2481.472 kb on - strandat 2481.485 kb on - strandat 2481.485 kb on - strandat 2481.515 kb on - strandat 2481.515 kb on - strandat 2481.515 kb on - strandat 2481.517 kb on - strandat 2481.521 kb on - strandat 2481.521 kb on - strandat 2481.647 kb on + strandat 2481.647 kb on + strandat 2481.650 kb on + strandat 2481.650 kb on + strandat 2481.666 kb on + strandat 2481.718 kb on + strandat 2481.718 kb on + strandat 2481.725 kb on + strandat 2481.726 kb on + strandat 2481.728 kb on + strandat 2481.734 kb on + strandat 2481.734 kb on + strandat 2481.742 kb on - strandat 2481.869 kb on + strand, within evgAat 2481.886 kb on + strand, within evgAat 2481.888 kb on + strand, within evgAat 2481.896 kb on + strand, within evgAat 2481.896 kb on + strand, within evgAat 2481.905 kb on + strand, within evgAat 2481.942 kb on + strand, within evgAat 2481.946 kb on + strand, within evgAat 2481.946 kb on + strand, within evgAat 2481.946 kb on + strand, within evgAat 2481.955 kb on + strand, within evgAat 2481.955 kb on + strand, within evgAat 2481.957 kb on + strand, within evgAat 2481.973 kb on + strand, within evgAat 2481.984 kb on + strand, within evgAat 2481.984 kb on + strand, within evgAat 2482.043 kb on + strand, within evgAat 2482.043 kb on + strand, within evgAat 2482.044 kb on + strand, within evgAat 2482.045 kb on + strand, within evgAat 2482.136 kb on + strand, within evgAat 2482.138 kb on + strand, within evgAat 2482.149 kb on + strand, within evgAat 2482.156 kb on - strand, within evgAat 2482.227 kb on + strand, within evgAat 2482.235 kb on + strand, within evgAat 2482.235 kb on + strand, within evgAat 2482.235 kb on + strand, within evgAat 2482.308 kb on + strand, within evgAat 2482.355 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Cephalothin 0.0000078125 mM
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2,479,253 - emrY b2367 0.39 +1.0
2,479,275 - emrY b2367 0.40 +1.0
2,479,275 - emrY b2367 0.40 +0.4
2,479,504 - emrY b2367 0.55 +1.0
2,479,885 - emrY b2367 0.80 +1.0
2,479,902 - emrY b2367 0.81 -0.6
2,480,011 - emrY b2367 0.88 +1.0
2,480,011 - emrY b2367 0.88 +1.0
2,480,016 - emrY b2367 0.88 +1.0
2,480,016 - emrY b2367 0.88 -0.0
2,480,020 + emrY b2367 0.88 +1.0
2,480,026 + emrY b2367 0.89 +1.0
2,480,026 + emrY b2367 0.89 +1.0
2,480,026 - emrY b2367 0.89 +1.0
2,480,027 + emrY b2367 0.89 +1.0
2,480,034 - emrY b2367 0.89 +1.0
2,480,034 - emrY b2367 0.89 +1.0
2,480,035 - emrY b2367 0.89 +1.0
2,480,035 - emrY b2367 0.89 +1.0
2,480,130 - +1.0
2,480,136 - +1.0
2,480,156 - +0.0
2,480,158 - +1.5
2,480,163 + +1.0
2,480,171 - +1.0
2,480,260 - -1.5
2,480,260 - +0.0
2,480,260 - +1.0
2,480,269 - -1.3
2,480,269 - -1.0
2,480,270 - +1.4
2,480,279 - +0.7
2,480,290 - +1.0
2,480,295 - +0.3
2,480,300 - -1.0
2,480,301 - +0.6
2,480,301 - +2.0
2,480,324 - emrK b2368 0.11 +0.0
2,480,324 - emrK b2368 0.11 +2.6
2,480,352 - emrK b2368 0.13 +0.0
2,480,352 - emrK b2368 0.13 -1.3
2,480,358 - emrK b2368 0.14 +2.4
2,480,362 + emrK b2368 0.14 +1.0
2,480,366 - emrK b2368 0.14 -2.2
2,480,376 + emrK b2368 0.15 +0.0
2,480,376 - emrK b2368 0.15 +0.0
2,480,378 - emrK b2368 0.15 +0.0
2,480,381 + emrK b2368 0.16 +1.1
2,480,398 + emrK b2368 0.17 +3.1
2,480,424 + emrK b2368 0.19 -1.0
2,480,432 - emrK b2368 0.20 -0.6
2,480,432 - emrK b2368 0.20 -1.0
2,480,437 - emrK b2368 0.21 +1.0
2,480,442 - emrK b2368 0.21 +0.0
2,480,450 + emrK b2368 0.22 -1.6
2,480,473 + emrK b2368 0.24 -2.2
2,480,478 + emrK b2368 0.24 +1.0
2,480,486 + emrK b2368 0.25 -1.3
2,480,497 + emrK b2368 0.26 +1.0
2,480,505 - emrK b2368 0.26 +0.0
2,480,511 + emrK b2368 0.27 -0.6
2,480,512 + emrK b2368 0.27 -0.6
2,480,522 + emrK b2368 0.28 +1.0
2,480,569 + emrK b2368 0.32 -0.6
2,480,569 + emrK b2368 0.32 -0.6
2,480,579 + emrK b2368 0.33 -0.6
2,480,589 + emrK b2368 0.34 +1.3
2,480,589 + emrK b2368 0.34 -0.6
2,480,590 - emrK b2368 0.34 -0.6
2,480,647 - emrK b2368 0.39 +1.0
2,480,647 - emrK b2368 0.39 +1.0
2,480,650 + emrK b2368 0.39 -0.6
2,480,652 + emrK b2368 0.39 +0.0
2,480,652 + emrK b2368 0.39 +1.0
2,480,662 + emrK b2368 0.40 -1.8
2,480,674 - emrK b2368 0.41 +1.0
2,480,684 + emrK b2368 0.42 +0.3
2,480,686 + emrK b2368 0.42 -1.1
2,480,689 + emrK b2368 0.42 -2.3
2,480,689 + emrK b2368 0.42 +1.0
2,480,694 + emrK b2368 0.43 +1.0
2,480,694 + emrK b2368 0.43 +0.0
2,480,696 + emrK b2368 0.43 +0.3
2,480,697 + emrK b2368 0.43 -0.8
2,480,697 + emrK b2368 0.43 +0.9
2,480,706 + emrK b2368 0.44 -0.1
2,480,706 + emrK b2368 0.44 +2.0
2,480,709 - emrK b2368 0.44 +1.0
2,480,709 - emrK b2368 0.44 +1.0
2,480,709 - emrK b2368 0.44 +1.0
2,480,726 + emrK b2368 0.45 -0.6
2,480,741 + emrK b2368 0.47 +0.6
2,480,769 + -0.6
2,480,769 + emrK b2368 0.49 +0.0
2,480,782 - emrK b2368 0.50 +1.0
2,480,787 + emrK b2368 0.51 +1.2
2,480,801 + emrK b2368 0.52 -0.7
2,480,801 + emrK b2368 0.52 -0.2
2,480,843 + emrK b2368 0.55 -1.0
2,480,843 + emrK b2368 0.55 +1.1
2,480,843 + emrK b2368 0.55 +0.4
2,480,843 + emrK b2368 0.55 -0.8
2,480,889 + emrK b2368 0.59 +1.0
2,480,897 - emrK b2368 0.60 +1.0
2,480,990 - emrK b2368 0.68 +1.0
2,481,080 - emrK b2368 0.76 +1.0
2,481,221 - emrK b2368 0.88 +1.0
2,481,434 - -0.3
2,481,444 - +1.5
2,481,444 - +0.0
2,481,450 - +1.0
2,481,450 - -1.0
2,481,463 - +1.6
2,481,472 - +0.6
2,481,485 - +2.4
2,481,485 - -2.6
2,481,515 - +1.0
2,481,515 - +0.0
2,481,515 - -1.0
2,481,517 - -0.6
2,481,521 - +1.0
2,481,521 - +1.0
2,481,647 + +0.6
2,481,647 + +1.8
2,481,650 + +0.9
2,481,650 + +0.7
2,481,666 + +0.7
2,481,718 + +1.0
2,481,718 + +0.0
2,481,725 + +1.0
2,481,726 + +1.0
2,481,728 + +1.0
2,481,734 + +1.0
2,481,734 + +1.0
2,481,742 - +1.0
2,481,869 + evgA b2369 0.15 +0.0
2,481,886 + evgA b2369 0.18 +1.0
2,481,888 + evgA b2369 0.18 +1.0
2,481,896 + evgA b2369 0.19 +1.0
2,481,896 + evgA b2369 0.19 +1.0
2,481,905 + evgA b2369 0.21 -1.0
2,481,942 + evgA b2369 0.27 -1.6
2,481,946 + evgA b2369 0.27 -0.8
2,481,946 + evgA b2369 0.27 -1.0
2,481,946 + evgA b2369 0.27 -1.3
2,481,955 + evgA b2369 0.29 +1.0
2,481,955 + evgA b2369 0.29 +0.0
2,481,957 + evgA b2369 0.29 +1.0
2,481,973 + evgA b2369 0.32 -0.9
2,481,984 + evgA b2369 0.34 -1.0
2,481,984 + evgA b2369 0.34 +1.0
2,482,043 + evgA b2369 0.43 +0.0
2,482,043 + evgA b2369 0.43 +1.0
2,482,044 + evgA b2369 0.43 +3.6
2,482,045 + evgA b2369 0.44 -0.6
2,482,136 + evgA b2369 0.58 +1.0
2,482,138 + evgA b2369 0.59 +1.0
2,482,149 + evgA b2369 0.60 +1.0
2,482,156 - evgA b2369 0.62 +1.0
2,482,227 + evgA b2369 0.73 -0.6
2,482,235 + evgA b2369 0.74 +1.0
2,482,235 + evgA b2369 0.74 +1.0
2,482,235 + evgA b2369 0.74 +1.0
2,482,308 + evgA b2369 0.86 +1.0
2,482,355 + +0.0

Or see this region's nucleotide sequence