Strain Fitness in Escherichia coli BW25113 around b1209

Experiment: LB Anaerobic with Cephalothin 0.0000078125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntispE and lolB overlap by 1 nucleotideslolB and hemA are separated by 213 nucleotides b1208: ispE - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (NCBI), at 1,261,249 to 1,262,100 ispE b1209: lolB - outer membrane lipoprotein LolB precursor (NCBI), at 1,262,100 to 1,262,723 lolB b1210: hemA - glutamyl-tRNA reductase (NCBI), at 1,262,937 to 1,264,193 hemA Position (kb) 1262 1263Strain fitness (log2 ratio) -1 0 1 2 3 4at 1261.178 kb on - strandat 1262.885 kb on + strandat 1262.934 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Cephalothin 0.0000078125 mM
remove
1,261,178 - +4.1
1,262,885 + +0.1
1,262,934 + -0.5

Or see this region's nucleotide sequence