Experiment: LB Anaerobic with Cephalothin 0.0000078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yliB and yliC are separated by 17 nucleotides yliC and yliD are separated by 2 nucleotides yliD and yliE are separated by 177 nucleotides
b0830: yliB - predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily (NCBI), at 868,634 to 870,172
yliB
b0831: yliC - predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI), at 870,190 to 871,110
yliC
b0832: yliD - predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI), at 871,113 to 872,024
yliD
b0833: yliE - conserved inner membrane protein (NCBI), at 872,202 to 874,550
yliE
Position (kb) 871
872
873 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 870.136 kb on - strand at 870.209 kb on - strand at 870.209 kb on - strand at 870.274 kb on + strand at 870.347 kb on - strand, within yliC at 870.379 kb on - strand, within yliC at 870.411 kb on - strand, within yliC at 870.426 kb on + strand, within yliC at 870.590 kb on - strand, within yliC at 870.598 kb on - strand, within yliC at 870.796 kb on + strand, within yliC at 870.852 kb on - strand, within yliC at 870.883 kb on - strand, within yliC at 870.923 kb on + strand, within yliC at 871.104 kb on - strand at 871.104 kb on - strand at 871.111 kb on + strand at 871.111 kb on + strand at 871.168 kb on + strand at 871.168 kb on + strand at 871.188 kb on - strand at 871.363 kb on - strand, within yliD at 871.363 kb on - strand, within yliD at 871.368 kb on - strand, within yliD at 871.381 kb on + strand, within yliD at 871.381 kb on + strand, within yliD at 871.589 kb on + strand, within yliD at 871.678 kb on + strand, within yliD at 871.691 kb on + strand, within yliD at 871.714 kb on + strand, within yliD at 871.714 kb on + strand, within yliD at 871.722 kb on - strand, within yliD at 871.722 kb on - strand, within yliD at 871.757 kb on + strand, within yliD at 871.757 kb on + strand, within yliD at 871.765 kb on - strand, within yliD at 871.765 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.779 kb on - strand, within yliD at 871.794 kb on - strand, within yliD at 871.794 kb on - strand, within yliD at 871.857 kb on - strand, within yliD at 871.863 kb on + strand, within yliD at 871.864 kb on + strand, within yliD at 871.869 kb on + strand, within yliD at 871.869 kb on + strand, within yliD at 871.877 kb on - strand, within yliD at 871.877 kb on - strand, within yliD at 871.881 kb on + strand, within yliD at 871.881 kb on + strand, within yliD at 871.890 kb on - strand, within yliD at 871.902 kb on + strand, within yliD at 871.986 kb on + strand at 871.986 kb on + strand at 871.987 kb on + strand at 871.987 kb on + strand at 872.088 kb on - strand at 872.179 kb on + strand at 872.304 kb on + strand at 872.304 kb on + strand at 872.317 kb on + strand at 872.338 kb on + strand at 872.338 kb on + strand at 872.399 kb on + strand at 872.405 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Cephalothin 0.0000078125 mM remove 870,136 - +0.0 870,209 - +0.5 870,209 - -0.5 870,274 + +1.2 870,347 - yliC b0831 0.17 +0.8 870,379 - yliC b0831 0.21 -0.0 870,411 - yliC b0831 0.24 +0.6 870,426 + yliC b0831 0.26 +1.0 870,590 - yliC b0831 0.43 -1.1 870,598 - yliC b0831 0.44 +1.7 870,796 + yliC b0831 0.66 +0.9 870,852 - yliC b0831 0.72 -2.0 870,883 - yliC b0831 0.75 -1.3 870,923 + yliC b0831 0.80 +1.1 871,104 - -1.5 871,104 - -0.5 871,111 + -0.1 871,111 + +0.6 871,168 + +2.2 871,168 + -0.1 871,188 - +0.7 871,363 - yliD b0832 0.27 -0.8 871,363 - yliD b0832 0.27 +1.2 871,368 - yliD b0832 0.28 -0.6 871,381 + yliD b0832 0.29 -0.2 871,381 + yliD b0832 0.29 -1.6 871,589 + yliD b0832 0.52 -0.3 871,678 + yliD b0832 0.62 +0.9 871,691 + yliD b0832 0.63 +0.4 871,714 + yliD b0832 0.66 +0.5 871,714 + yliD b0832 0.66 +0.7 871,722 - yliD b0832 0.67 -1.9 871,722 - yliD b0832 0.67 +1.0 871,757 + yliD b0832 0.71 +0.3 871,757 + yliD b0832 0.71 +0.5 871,765 - yliD b0832 0.71 +2.4 871,765 - yliD b0832 0.71 +0.0 871,779 - yliD b0832 0.73 -0.6 871,779 - yliD b0832 0.73 +0.0 871,779 - yliD b0832 0.73 +1.4 871,779 - yliD b0832 0.73 +1.0 871,794 - yliD b0832 0.75 -0.6 871,794 - yliD b0832 0.75 +0.0 871,857 - yliD b0832 0.82 +0.8 871,863 + yliD b0832 0.82 +1.0 871,864 + yliD b0832 0.82 +0.9 871,869 + yliD b0832 0.83 +0.0 871,869 + yliD b0832 0.83 +0.9 871,877 - yliD b0832 0.84 +2.2 871,877 - yliD b0832 0.84 +0.0 871,881 + yliD b0832 0.84 +0.8 871,881 + yliD b0832 0.84 +0.3 871,890 - yliD b0832 0.85 -0.6 871,902 + yliD b0832 0.87 -0.2 871,986 + +0.5 871,986 + +0.4 871,987 + -0.4 871,987 + +1.7 872,088 - +1.0 872,179 + +1.2 872,304 + +1.0 872,304 + +1.0 872,317 + +0.0 872,338 + +3.0 872,338 + +2.2 872,399 + +1.0 872,405 + +1.0
Or see this region's nucleotide sequence