Experiment: LB Anaerobic with Cephalothin 0.0000078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybdL and ybdM are separated by 0 nucleotides ybdM and ybdN overlap by 28 nucleotides
b0600: ybdL - putative aminotransferase (NCBI), at 632,809 to 633,969
ybdL
b0601: ybdM - hypothetical protein (NCBI), at 633,970 to 634,599
ybdM
b0602: ybdN - hypothetical protein (NCBI), at 634,572 to 635,792
ybdN
Position (kb) 633
634
635 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 633.223 kb on + strand, within ybdL at 633.228 kb on + strand, within ybdL at 633.228 kb on + strand, within ybdL at 633.228 kb on - strand, within ybdL at 633.320 kb on - strand, within ybdL at 633.322 kb on - strand, within ybdL at 633.327 kb on - strand, within ybdL at 633.351 kb on - strand, within ybdL at 633.418 kb on + strand, within ybdL at 633.418 kb on - strand, within ybdL at 633.418 kb on - strand, within ybdL at 633.442 kb on - strand, within ybdL at 633.442 kb on - strand, within ybdL at 633.541 kb on - strand, within ybdL at 633.551 kb on - strand, within ybdL at 633.570 kb on - strand, within ybdL at 633.572 kb on + strand, within ybdL at 633.587 kb on + strand, within ybdL at 633.597 kb on - strand, within ybdL at 633.717 kb on - strand, within ybdL at 633.825 kb on + strand, within ybdL at 633.853 kb on - strand, within ybdL at 633.970 kb on + strand at 634.194 kb on + strand, within ybdM at 634.206 kb on + strand, within ybdM at 634.214 kb on - strand, within ybdM at 634.214 kb on - strand, within ybdM at 634.214 kb on - strand, within ybdM at 634.214 kb on - strand, within ybdM at 634.214 kb on - strand, within ybdM at 634.309 kb on + strand, within ybdM at 634.335 kb on - strand, within ybdM at 634.335 kb on - strand, within ybdM at 634.337 kb on - strand, within ybdM at 634.464 kb on - strand, within ybdM at 634.477 kb on - strand, within ybdM at 634.486 kb on - strand, within ybdM at 634.486 kb on - strand, within ybdM at 634.593 kb on + strand at 634.672 kb on + strand at 634.687 kb on + strand at 634.720 kb on - strand, within ybdN at 634.963 kb on + strand, within ybdN at 634.977 kb on + strand, within ybdN at 635.018 kb on + strand, within ybdN at 635.018 kb on + strand, within ybdN at 635.039 kb on - strand, within ybdN at 635.132 kb on + strand, within ybdN at 635.140 kb on - strand, within ybdN at 635.140 kb on - strand, within ybdN at 635.298 kb on - strand, within ybdN at 635.431 kb on - strand, within ybdN at 635.437 kb on - strand, within ybdN at 635.457 kb on - strand, within ybdN at 635.475 kb on + strand, within ybdN at 635.500 kb on + strand, within ybdN at 635.505 kb on + strand, within ybdN at 635.505 kb on + strand, within ybdN at 635.542 kb on + strand, within ybdN at 635.545 kb on - strand, within ybdN at 635.545 kb on - strand, within ybdN
Per-strain Table
Position Strand Gene LocusTag Fraction LB Anaerobic with Cephalothin 0.0000078125 mM remove 633,223 + ybdL b0600 0.36 -0.7 633,228 + ybdL b0600 0.36 -1.9 633,228 + ybdL b0600 0.36 -0.9 633,228 - ybdL b0600 0.36 +0.9 633,320 - ybdL b0600 0.44 -0.6 633,322 - ybdL b0600 0.44 +0.1 633,327 - ybdL b0600 0.45 -1.8 633,351 - ybdL b0600 0.47 -0.1 633,418 + ybdL b0600 0.52 +1.1 633,418 - ybdL b0600 0.52 +0.3 633,418 - ybdL b0600 0.52 -3.2 633,442 - ybdL b0600 0.55 -0.4 633,442 - ybdL b0600 0.55 +0.4 633,541 - ybdL b0600 0.63 -0.1 633,551 - ybdL b0600 0.64 +1.6 633,570 - ybdL b0600 0.66 +0.2 633,572 + ybdL b0600 0.66 -0.1 633,587 + ybdL b0600 0.67 -0.4 633,597 - ybdL b0600 0.68 -0.5 633,717 - ybdL b0600 0.78 +1.5 633,825 + ybdL b0600 0.88 +1.0 633,853 - ybdL b0600 0.90 +1.1 633,970 + -0.5 634,194 + ybdM b0601 0.36 +0.3 634,206 + ybdM b0601 0.37 +1.2 634,214 - ybdM b0601 0.39 +1.3 634,214 - ybdM b0601 0.39 +0.1 634,214 - ybdM b0601 0.39 +2.8 634,214 - ybdM b0601 0.39 +0.5 634,214 - ybdM b0601 0.39 -0.2 634,309 + ybdM b0601 0.54 -1.2 634,335 - ybdM b0601 0.58 -0.7 634,335 - ybdM b0601 0.58 -2.2 634,337 - ybdM b0601 0.58 -0.1 634,464 - ybdM b0601 0.78 -2.4 634,477 - ybdM b0601 0.80 +0.1 634,486 - ybdM b0601 0.82 -0.1 634,486 - ybdM b0601 0.82 -1.2 634,593 + -0.4 634,672 + -0.5 634,687 + +0.3 634,720 - ybdN b0602 0.12 -0.3 634,963 + ybdN b0602 0.32 +0.7 634,977 + ybdN b0602 0.33 +1.3 635,018 + ybdN b0602 0.37 -2.5 635,018 + ybdN b0602 0.37 -0.9 635,039 - ybdN b0602 0.38 +0.9 635,132 + ybdN b0602 0.46 +0.6 635,140 - ybdN b0602 0.47 +0.9 635,140 - ybdN b0602 0.47 -1.0 635,298 - ybdN b0602 0.59 +0.2 635,431 - ybdN b0602 0.70 +1.6 635,437 - ybdN b0602 0.71 +0.2 635,457 - ybdN b0602 0.72 +2.1 635,475 + ybdN b0602 0.74 -1.8 635,500 + ybdN b0602 0.76 +1.7 635,505 + ybdN b0602 0.76 -0.5 635,505 + ybdN b0602 0.76 +2.1 635,542 + ybdN b0602 0.79 +0.1 635,545 - ybdN b0602 0.80 -1.2 635,545 - ybdN b0602 0.80 +0.5
Or see this region's nucleotide sequence