Strain Fitness in Pseudomonas simiae WCS417 around PS417_04035

Experiment: Growth on radish seeds for 72 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04030 and PS417_04035 are separated by 167 nucleotidesPS417_04035 and PS417_04040 are separated by 96 nucleotidesPS417_04040 and PS417_04045 are separated by 113 nucleotides PS417_04030: PS417_04030 - peptide chain release factor 3, at 904,777 to 906,360 _04030 PS417_04035: PS417_04035 - hypothetical protein, at 906,528 to 906,773 _04035 PS417_04040: PS417_04040 - hypothetical protein, at 906,870 to 907,124 _04040 PS417_04045: PS417_04045 - peptide ABC transporter ATP-binding protein, at 907,238 to 908,209 _04045 Position (kb) 906 907Strain fitness (log2 ratio) -2 -1 0 1 2at 906.376 kb on + strandat 906.376 kb on + strandat 906.377 kb on - strandat 906.484 kb on + strandat 906.484 kb on + strandat 906.485 kb on - strandat 906.492 kb on + strandat 906.533 kb on + strandat 906.534 kb on - strandat 906.534 kb on - strandat 906.534 kb on - strandat 906.534 kb on - strandat 906.726 kb on + strand, within PS417_04035at 906.727 kb on - strand, within PS417_04035at 906.753 kb on + strandat 906.754 kb on - strandat 906.844 kb on + strandat 906.844 kb on + strandat 906.844 kb on + strandat 907.122 kb on + strandat 907.123 kb on - strandat 907.186 kb on - strandat 907.186 kb on - strandat 907.590 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours
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906,376 + -0.1
906,376 + -0.4
906,377 - +0.9
906,484 + +1.2
906,484 + -0.8
906,485 - +0.0
906,492 + -0.7
906,533 + -2.3
906,534 - +1.8
906,534 - -0.7
906,534 - +0.2
906,534 - -0.7
906,726 + PS417_04035 0.80 +0.0
906,727 - PS417_04035 0.81 +0.4
906,753 + +0.5
906,754 - +0.4
906,844 + -0.6
906,844 + +0.2
906,844 + -0.2
907,122 + +0.0
907,123 - +1.2
907,186 - +1.4
907,186 - -0.8
907,590 + +1.2

Or see this region's nucleotide sequence