Experiment: Growth on radish seeds for 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03505 and PS417_03510 are separated by 0 nucleotides PS417_03510 and PS417_03515 are separated by 11 nucleotides PS417_03515 and PS417_03520 overlap by 4 nucleotides PS417_03520 and PS417_03525 are separated by 14 nucleotides PS417_03525 and PS417_03530 are separated by 1 nucleotides PS417_03530 and PS417_03535 are separated by 74 nucleotides
PS417_03505: PS417_03505 - type III secretion system protein, at 803,013 to 804,110
_03505
PS417_03510: PS417_03510 - type III secretion system negative regulatory protein RspV, at 804,111 to 804,449
_03510
PS417_03515: PS417_03515 - type III secretion protein, at 804,461 to 804,664
_03515
PS417_03520: PS417_03520 - secretin, at 804,661 to 806,802
_03520
PS417_03525: PS417_03525 - hypothetical protein, at 806,817 to 807,209
_03525
PS417_03530: PS417_03530 - hypothetical protein, at 807,211 to 807,429
_03530
PS417_03535: PS417_03535 - type III secretion protein, at 807,504 to 808,115
_03535
Position (kb) 804
805
806
807 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 803.745 kb on + strand, within PS417_03505 at 803.842 kb on - strand, within PS417_03505 at 803.855 kb on + strand, within PS417_03505 at 803.956 kb on + strand, within PS417_03505 at 803.956 kb on + strand, within PS417_03505 at 803.956 kb on + strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 804.229 kb on + strand, within PS417_03510 at 804.230 kb on - strand, within PS417_03510 at 804.230 kb on - strand, within PS417_03510 at 804.233 kb on + strand, within PS417_03510 at 804.233 kb on + strand, within PS417_03510 at 804.605 kb on - strand, within PS417_03515 at 804.752 kb on - strand at 804.752 kb on - strand at 804.890 kb on + strand, within PS417_03520 at 805.137 kb on - strand, within PS417_03520 at 805.416 kb on + strand, within PS417_03520 at 805.416 kb on + strand, within PS417_03520 at 805.426 kb on + strand, within PS417_03520 at 805.501 kb on + strand, within PS417_03520 at 805.527 kb on - strand, within PS417_03520 at 805.547 kb on + strand, within PS417_03520 at 805.547 kb on + strand, within PS417_03520 at 805.547 kb on + strand, within PS417_03520 at 805.547 kb on + strand, within PS417_03520 at 805.547 kb on + strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.776 kb on + strand, within PS417_03520 at 805.777 kb on - strand, within PS417_03520 at 805.777 kb on - strand, within PS417_03520 at 805.880 kb on + strand, within PS417_03520 at 805.880 kb on + strand, within PS417_03520 at 805.881 kb on - strand, within PS417_03520 at 805.903 kb on + strand, within PS417_03520 at 805.903 kb on + strand, within PS417_03520 at 806.279 kb on + strand, within PS417_03520 at 806.279 kb on + strand, within PS417_03520 at 806.605 kb on + strand at 806.796 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.803 kb on - strand at 806.803 kb on - strand at 806.803 kb on - strand at 806.818 kb on + strand at 807.132 kb on + strand, within PS417_03525 at 807.162 kb on + strand, within PS417_03525 at 807.187 kb on + strand at 807.273 kb on - strand, within PS417_03530 at 807.278 kb on + strand, within PS417_03530 at 807.359 kb on + strand, within PS417_03530 at 807.360 kb on - strand, within PS417_03530 at 807.378 kb on + strand, within PS417_03530 at 807.378 kb on + strand, within PS417_03530 at 807.436 kb on - strand at 807.436 kb on - strand at 807.480 kb on - strand at 807.491 kb on + strand at 807.527 kb on + strand at 807.527 kb on + strand at 807.616 kb on - strand at 807.734 kb on + strand, within PS417_03535 at 807.735 kb on - strand, within PS417_03535 at 807.779 kb on + strand, within PS417_03535 at 807.779 kb on + strand, within PS417_03535 at 807.780 kb on - strand, within PS417_03535 at 807.782 kb on + strand, within PS417_03535
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours remove 803,745 + PS417_03505 0.67 -0.4 803,842 - PS417_03505 0.76 +0.1 803,855 + PS417_03505 0.77 -0.7 803,956 + PS417_03505 0.86 -0.1 803,956 + PS417_03505 0.86 +2.8 803,956 + PS417_03505 0.86 +0.6 803,957 - PS417_03505 0.86 +0.6 803,957 - PS417_03505 0.86 -0.2 803,957 - PS417_03505 0.86 -1.1 803,957 - PS417_03505 0.86 -1.1 804,229 + PS417_03510 0.35 +2.0 804,230 - PS417_03510 0.35 +0.0 804,230 - PS417_03510 0.35 +0.6 804,233 + PS417_03510 0.36 +2.0 804,233 + PS417_03510 0.36 -1.2 804,605 - PS417_03515 0.71 -0.8 804,752 - -1.1 804,752 - +1.2 804,890 + PS417_03520 0.11 +0.0 805,137 - PS417_03520 0.22 -0.4 805,416 + PS417_03520 0.35 -0.8 805,416 + PS417_03520 0.35 +0.2 805,426 + PS417_03520 0.36 -1.7 805,501 + PS417_03520 0.39 -0.8 805,527 - PS417_03520 0.40 +0.2 805,547 + PS417_03520 0.41 +0.2 805,547 + PS417_03520 0.41 -1.1 805,547 + PS417_03520 0.41 +0.2 805,547 + PS417_03520 0.41 +0.2 805,547 + PS417_03520 0.41 -0.6 805,548 - PS417_03520 0.41 -1.2 805,548 - PS417_03520 0.41 -0.8 805,548 - PS417_03520 0.41 -0.9 805,548 - PS417_03520 0.41 -1.2 805,548 - PS417_03520 0.41 +2.0 805,548 - PS417_03520 0.41 -1.0 805,776 + PS417_03520 0.52 -1.2 805,777 - PS417_03520 0.52 -1.4 805,777 - PS417_03520 0.52 -1.9 805,880 + PS417_03520 0.57 -0.1 805,880 + PS417_03520 0.57 -0.0 805,881 - PS417_03520 0.57 -1.1 805,903 + PS417_03520 0.58 +0.2 805,903 + PS417_03520 0.58 +2.0 806,279 + PS417_03520 0.76 -1.1 806,279 + PS417_03520 0.76 +1.4 806,605 + -2.2 806,796 + -0.1 806,802 + +1.5 806,802 + +0.9 806,802 + +0.1 806,802 + -1.4 806,802 + -1.6 806,802 + -0.5 806,803 - -0.0 806,803 - +1.2 806,803 - +1.8 806,818 + -0.2 807,132 + PS417_03525 0.80 +1.2 807,162 + PS417_03525 0.88 -0.4 807,187 + -0.9 807,273 - PS417_03530 0.28 -0.8 807,278 + PS417_03530 0.31 +1.2 807,359 + PS417_03530 0.68 -0.0 807,360 - PS417_03530 0.68 -1.2 807,378 + PS417_03530 0.76 -0.7 807,378 + PS417_03530 0.76 +0.3 807,436 - +1.1 807,436 - -2.5 807,480 - +1.2 807,491 + -0.5 807,527 + -0.5 807,527 + +0.2 807,616 - +0.2 807,734 + PS417_03535 0.38 -0.7 807,735 - PS417_03535 0.38 +3.4 807,779 + PS417_03535 0.45 +0.5 807,779 + PS417_03535 0.45 +0.1 807,780 - PS417_03535 0.45 -1.1 807,782 + PS417_03535 0.45 -2.7
Or see this region's nucleotide sequence