Strain Fitness in Pseudomonas simiae WCS417 around PS417_02665

Experiment: Growth on radish seeds for 72 hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_02660 and PS417_02665 are separated by 2 nucleotidesPS417_02665 and PS417_02670 overlap by 4 nucleotidesPS417_02670 and PS417_02675 overlap by 4 nucleotides PS417_02660: PS417_02660 - branched-chain amino acid transporter permease subunit LivH, at 609,272 to 610,186 _02660 PS417_02665: PS417_02665 - branched-chain amino acid ABC transporter permease, at 610,189 to 611,466 _02665 PS417_02670: PS417_02670 - ABC transporter, at 611,463 to 612,338 _02670 PS417_02675: PS417_02675 - ABC transporter ATP-binding protein, at 612,335 to 613,051 _02675 Position (kb) 610 611 612Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 609.202 kb on + strandat 609.280 kb on + strandat 609.281 kb on - strandat 609.281 kb on - strandat 609.360 kb on - strandat 609.401 kb on + strand, within PS417_02660at 609.401 kb on + strand, within PS417_02660at 609.402 kb on - strand, within PS417_02660at 609.402 kb on - strand, within PS417_02660at 609.403 kb on + strand, within PS417_02660at 609.403 kb on + strandat 609.404 kb on - strand, within PS417_02660at 609.404 kb on - strand, within PS417_02660at 609.450 kb on - strand, within PS417_02660at 609.450 kb on - strand, within PS417_02660at 609.658 kb on + strand, within PS417_02660at 609.659 kb on - strand, within PS417_02660at 609.722 kb on + strand, within PS417_02660at 609.723 kb on - strand, within PS417_02660at 609.723 kb on - strand, within PS417_02660at 609.724 kb on + strand, within PS417_02660at 609.724 kb on + strand, within PS417_02660at 609.776 kb on + strand, within PS417_02660at 609.776 kb on + strand, within PS417_02660at 609.776 kb on + strand, within PS417_02660at 609.776 kb on + strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.777 kb on - strand, within PS417_02660at 609.788 kb on + strand, within PS417_02660at 609.879 kb on - strand, within PS417_02660at 609.879 kb on - strand, within PS417_02660at 609.879 kb on - strand, within PS417_02660at 609.938 kb on + strand, within PS417_02660at 610.094 kb on + strand, within PS417_02660at 610.184 kb on + strandat 610.184 kb on + strandat 610.184 kb on + strandat 610.185 kb on - strandat 610.185 kb on - strandat 610.185 kb on - strandat 610.446 kb on - strand, within PS417_02665at 610.459 kb on + strand, within PS417_02665at 610.460 kb on - strand, within PS417_02665at 610.460 kb on - strand, within PS417_02665at 610.534 kb on + strand, within PS417_02665at 610.535 kb on - strand, within PS417_02665at 610.535 kb on - strand, within PS417_02665at 610.567 kb on + strand, within PS417_02665at 610.567 kb on + strand, within PS417_02665at 610.568 kb on - strand, within PS417_02665at 610.642 kb on + strand, within PS417_02665at 610.642 kb on + strand, within PS417_02665at 610.748 kb on + strand, within PS417_02665at 610.783 kb on + strand, within PS417_02665at 610.783 kb on + strand, within PS417_02665at 610.783 kb on + strand, within PS417_02665at 610.784 kb on - strand, within PS417_02665at 610.935 kb on - strand, within PS417_02665at 610.963 kb on + strand, within PS417_02665at 610.963 kb on + strand, within PS417_02665at 610.964 kb on - strand, within PS417_02665at 610.964 kb on - strand, within PS417_02665at 610.993 kb on + strand, within PS417_02665at 610.994 kb on - strand, within PS417_02665at 610.994 kb on - strand, within PS417_02665at 611.029 kb on + strand, within PS417_02665at 611.029 kb on + strand, within PS417_02665at 611.029 kb on + strand, within PS417_02665at 611.030 kb on - strand, within PS417_02665at 611.030 kb on - strand, within PS417_02665at 611.030 kb on - strand, within PS417_02665at 611.127 kb on - strand, within PS417_02665at 611.127 kb on - strand, within PS417_02665at 611.449 kb on - strandat 611.449 kb on - strandat 611.628 kb on + strand, within PS417_02670at 611.628 kb on + strand, within PS417_02670at 611.758 kb on - strand, within PS417_02670at 611.961 kb on + strand, within PS417_02670at 611.962 kb on - strand, within PS417_02670at 612.307 kb on - strandat 612.307 kb on - strandat 612.335 kb on - strandat 612.335 kb on - strandat 612.347 kb on - strandat 612.374 kb on + strandat 612.377 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours
remove
609,202 + -0.5
609,280 + +0.8
609,281 - -0.0
609,281 - +1.4
609,360 - +1.4
609,401 + PS417_02660 0.14 +0.7
609,401 + PS417_02660 0.14 +1.4
609,402 - PS417_02660 0.14 +0.6
609,402 - PS417_02660 0.14 -2.0
609,403 + PS417_02660 0.14 +1.5
609,403 + +2.4
609,404 - PS417_02660 0.14 +0.0
609,404 - PS417_02660 0.14 -0.6
609,450 - PS417_02660 0.19 -2.2
609,450 - PS417_02660 0.19 -0.8
609,658 + PS417_02660 0.42 +0.2
609,659 - PS417_02660 0.42 -1.2
609,722 + PS417_02660 0.49 -0.2
609,723 - PS417_02660 0.49 +0.1
609,723 - PS417_02660 0.49 +0.7
609,724 + PS417_02660 0.49 +1.4
609,724 + PS417_02660 0.49 -0.4
609,776 + PS417_02660 0.55 +3.0
609,776 + PS417_02660 0.55 -1.1
609,776 + PS417_02660 0.55 +0.1
609,776 + PS417_02660 0.55 -1.6
609,777 - PS417_02660 0.55 +0.1
609,777 - PS417_02660 0.55 -0.1
609,777 - PS417_02660 0.55 -0.3
609,777 - PS417_02660 0.55 +2.0
609,777 - PS417_02660 0.55 +0.1
609,777 - PS417_02660 0.55 +1.6
609,777 - PS417_02660 0.55 +3.0
609,788 + PS417_02660 0.56 +0.8
609,879 - PS417_02660 0.66 +1.1
609,879 - PS417_02660 0.66 -0.2
609,879 - PS417_02660 0.66 +0.4
609,938 + PS417_02660 0.73 -0.1
610,094 + PS417_02660 0.90 +0.1
610,184 + +0.1
610,184 + -0.6
610,184 + -0.7
610,185 - -1.6
610,185 - +1.3
610,185 - +2.0
610,446 - PS417_02665 0.20 +0.0
610,459 + PS417_02665 0.21 +0.4
610,460 - PS417_02665 0.21 +0.1
610,460 - PS417_02665 0.21 +0.3
610,534 + PS417_02665 0.27 +1.7
610,535 - PS417_02665 0.27 +0.4
610,535 - PS417_02665 0.27 -1.6
610,567 + PS417_02665 0.30 -0.4
610,567 + PS417_02665 0.30 -0.1
610,568 - PS417_02665 0.30 -0.5
610,642 + PS417_02665 0.35 +2.0
610,642 + PS417_02665 0.35 +2.0
610,748 + PS417_02665 0.44 +1.2
610,783 + PS417_02665 0.46 -1.9
610,783 + PS417_02665 0.46 -0.2
610,783 + PS417_02665 0.46 +1.4
610,784 - PS417_02665 0.47 -1.2
610,935 - PS417_02665 0.58 +1.3
610,963 + PS417_02665 0.61 +1.2
610,963 + PS417_02665 0.61 -0.2
610,964 - PS417_02665 0.61 +1.5
610,964 - PS417_02665 0.61 +3.0
610,993 + PS417_02665 0.63 +1.4
610,994 - PS417_02665 0.63 +0.6
610,994 - PS417_02665 0.63 -1.8
611,029 + PS417_02665 0.66 +1.4
611,029 + PS417_02665 0.66 +2.1
611,029 + PS417_02665 0.66 +2.0
611,030 - PS417_02665 0.66 -1.4
611,030 - PS417_02665 0.66 -0.9
611,030 - PS417_02665 0.66 +3.1
611,127 - PS417_02665 0.73 -2.9
611,127 - PS417_02665 0.73 -1.3
611,449 - +0.3
611,449 - +0.8
611,628 + PS417_02670 0.19 +1.2
611,628 + PS417_02670 0.19 +1.6
611,758 - PS417_02670 0.34 -0.2
611,961 + PS417_02670 0.57 +0.8
611,962 - PS417_02670 0.57 -2.0
612,307 - -1.4
612,307 - +0.4
612,335 - +0.4
612,335 - -0.2
612,347 - -0.1
612,374 + -0.2
612,377 + -0.7

Or see this region's nucleotide sequence