Strain Fitness in Pseudomonas simiae WCS417 around PS417_26630

Experiment: Growth on radish seeds for 72 hours

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_26620 and PS417_26625 are separated by 164 nucleotidesPS417_26625 and PS417_26630 overlap by 38 nucleotidesPS417_26630 and PS417_26635 are separated by 61 nucleotidesPS417_26635 and PS417_26640 are separated by 330 nucleotides PS417_26620: PS417_26620 - malonate decarboxylase subunit alpha, at 5,753,148 to 5,754,818 _26620 PS417_26625: PS417_26625 - hypothetical protein, at 5,754,983 to 5,755,417 _26625 PS417_26630: PS417_26630 - transcriptional regulator, at 5,755,380 to 5,756,009 _26630 PS417_26635: PS417_26635 - hypothetical protein, at 5,756,071 to 5,756,310 _26635 PS417_26640: PS417_26640 - hypothetical protein, at 5,756,641 to 5,756,859 _26640 Position (kb) 5755 5756 5757Strain fitness (log2 ratio) -2 -1 0 1 2at 5754.406 kb on + strand, within PS417_26620at 5754.407 kb on - strand, within PS417_26620at 5754.418 kb on + strand, within PS417_26620at 5754.418 kb on + strand, within PS417_26620at 5754.418 kb on + strand, within PS417_26620at 5754.418 kb on + strand, within PS417_26620at 5754.418 kb on + strand, within PS417_26620at 5754.418 kb on + strand, within PS417_26620at 5754.419 kb on - strand, within PS417_26620at 5754.419 kb on - strand, within PS417_26620at 5754.419 kb on - strand, within PS417_26620at 5754.419 kb on - strand, within PS417_26620at 5754.419 kb on - strand, within PS417_26620at 5754.419 kb on - strand, within PS417_26620at 5754.419 kb on - strand, within PS417_26620at 5754.423 kb on - strand, within PS417_26620at 5754.657 kb on + strandat 5754.658 kb on - strandat 5754.737 kb on - strandat 5754.850 kb on + strandat 5754.851 kb on - strandat 5754.855 kb on + strandat 5754.855 kb on + strandat 5754.856 kb on - strandat 5754.966 kb on + strandat 5754.967 kb on - strandat 5755.036 kb on + strand, within PS417_26625at 5755.037 kb on - strand, within PS417_26625at 5755.083 kb on + strand, within PS417_26625at 5755.083 kb on + strand, within PS417_26625at 5755.083 kb on + strand, within PS417_26625at 5755.084 kb on - strand, within PS417_26625at 5755.092 kb on + strand, within PS417_26625at 5755.093 kb on - strand, within PS417_26625at 5755.162 kb on + strand, within PS417_26625at 5755.162 kb on + strand, within PS417_26625at 5755.254 kb on + strand, within PS417_26625at 5755.254 kb on + strand, within PS417_26625at 5755.254 kb on + strand, within PS417_26625at 5755.255 kb on - strand, within PS417_26625at 5755.255 kb on - strand, within PS417_26625at 5755.255 kb on - strand, within PS417_26625at 5755.255 kb on - strand, within PS417_26625at 5755.283 kb on + strand, within PS417_26625at 5755.403 kb on + strandat 5755.597 kb on + strand, within PS417_26630at 5755.597 kb on + strand, within PS417_26630at 5755.597 kb on + strand, within PS417_26630at 5755.629 kb on + strand, within PS417_26630at 5755.629 kb on + strand, within PS417_26630at 5755.629 kb on + strand, within PS417_26630at 5755.629 kb on + strand, within PS417_26630at 5755.713 kb on + strand, within PS417_26630at 5755.713 kb on + strand, within PS417_26630at 5755.774 kb on + strand, within PS417_26630at 5755.801 kb on + strand, within PS417_26630at 5755.802 kb on - strand, within PS417_26630at 5756.119 kb on + strand, within PS417_26635at 5756.119 kb on + strand, within PS417_26635at 5756.119 kb on + strand, within PS417_26635at 5756.272 kb on + strand, within PS417_26635at 5756.322 kb on + strandat 5756.408 kb on - strandat 5756.498 kb on - strandat 5756.498 kb on - strandat 5756.642 kb on + strandat 5756.652 kb on + strandat 5756.652 kb on + strandat 5756.652 kb on + strandat 5756.652 kb on + strandat 5756.652 kb on + strandat 5756.653 kb on - strandat 5756.653 kb on - strandat 5756.653 kb on - strandat 5756.653 kb on - strandat 5756.653 kb on - strandat 5756.656 kb on + strandat 5756.656 kb on + strandat 5756.656 kb on + strandat 5756.656 kb on + strandat 5756.656 kb on + strandat 5756.656 kb on + strandat 5756.656 kb on + strandat 5756.657 kb on - strandat 5756.657 kb on - strandat 5756.657 kb on - strandat 5756.702 kb on + strand, within PS417_26640at 5756.702 kb on + strand, within PS417_26640at 5756.703 kb on - strand, within PS417_26640at 5756.778 kb on - strand, within PS417_26640at 5756.778 kb on - strand, within PS417_26640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours
remove
5,754,406 + PS417_26620 0.75 +2.4
5,754,407 - PS417_26620 0.75 -0.1
5,754,418 + PS417_26620 0.76 +0.2
5,754,418 + PS417_26620 0.76 -0.6
5,754,418 + PS417_26620 0.76 -0.6
5,754,418 + PS417_26620 0.76 +0.4
5,754,418 + PS417_26620 0.76 -0.6
5,754,418 + PS417_26620 0.76 -0.7
5,754,419 - PS417_26620 0.76 +0.1
5,754,419 - PS417_26620 0.76 +0.6
5,754,419 - PS417_26620 0.76 -0.3
5,754,419 - PS417_26620 0.76 -0.1
5,754,419 - PS417_26620 0.76 -0.9
5,754,419 - PS417_26620 0.76 -0.6
5,754,419 - PS417_26620 0.76 +1.9
5,754,423 - PS417_26620 0.76 -0.6
5,754,657 + +0.2
5,754,658 - +0.8
5,754,737 - -0.9
5,754,850 + +1.4
5,754,851 - +0.1
5,754,855 + -0.8
5,754,855 + +2.7
5,754,856 - +1.1
5,754,966 + +2.0
5,754,967 - +2.2
5,755,036 + PS417_26625 0.12 +0.4
5,755,037 - PS417_26625 0.12 -0.6
5,755,083 + PS417_26625 0.23 -0.3
5,755,083 + PS417_26625 0.23 +0.4
5,755,083 + PS417_26625 0.23 +2.4
5,755,084 - PS417_26625 0.23 -0.6
5,755,092 + PS417_26625 0.25 +1.0
5,755,093 - PS417_26625 0.25 +0.4
5,755,162 + PS417_26625 0.41 -1.1
5,755,162 + PS417_26625 0.41 -0.9
5,755,254 + PS417_26625 0.62 -0.8
5,755,254 + PS417_26625 0.62 -1.4
5,755,254 + PS417_26625 0.62 +0.4
5,755,255 - PS417_26625 0.63 -1.0
5,755,255 - PS417_26625 0.63 -0.6
5,755,255 - PS417_26625 0.63 +1.8
5,755,255 - PS417_26625 0.63 -0.5
5,755,283 + PS417_26625 0.69 -0.6
5,755,403 + +0.1
5,755,597 + PS417_26630 0.34 -1.8
5,755,597 + PS417_26630 0.34 +0.5
5,755,597 + PS417_26630 0.34 -1.4
5,755,629 + PS417_26630 0.40 +0.9
5,755,629 + PS417_26630 0.40 +0.5
5,755,629 + PS417_26630 0.40 -0.1
5,755,629 + PS417_26630 0.40 +0.5
5,755,713 + PS417_26630 0.53 +0.9
5,755,713 + PS417_26630 0.53 -0.1
5,755,774 + PS417_26630 0.63 +0.5
5,755,801 + PS417_26630 0.67 +0.9
5,755,802 - PS417_26630 0.67 +1.5
5,756,119 + PS417_26635 0.20 +0.6
5,756,119 + PS417_26635 0.20 -1.1
5,756,119 + PS417_26635 0.20 +1.4
5,756,272 + PS417_26635 0.84 -0.1
5,756,322 + +0.8
5,756,408 - +0.1
5,756,498 - +0.0
5,756,498 - -0.2
5,756,642 + +1.4
5,756,652 + +0.3
5,756,652 + +1.4
5,756,652 + +1.4
5,756,652 + +0.5
5,756,652 + +0.4
5,756,653 - +1.4
5,756,653 - -1.1
5,756,653 - +0.6
5,756,653 - -1.9
5,756,653 - +0.3
5,756,656 + -0.6
5,756,656 + -1.4
5,756,656 + +0.7
5,756,656 + -1.3
5,756,656 + -0.8
5,756,656 + -2.0
5,756,656 + -0.2
5,756,657 - +0.4
5,756,657 - +0.1
5,756,657 - -1.2
5,756,702 + PS417_26640 0.28 +0.1
5,756,702 + PS417_26640 0.28 -1.5
5,756,703 - PS417_26640 0.28 +0.1
5,756,778 - PS417_26640 0.63 +1.0
5,756,778 - PS417_26640 0.63 -0.6

Or see this region's nucleotide sequence