Experiment: Growth on radish seeds for 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26105 and PS417_26110 overlap by 4 nucleotides PS417_26110 and PS417_26115 are separated by 107 nucleotides PS417_26115 and PS417_26120 are separated by 79 nucleotides PS417_26120 and PS417_26125 are separated by 34 nucleotides
PS417_26105: PS417_26105 - ABC transporter permease, at 5,642,979 to 5,643,698
_26105
PS417_26110: PS417_26110 - ABC transporter permease, at 5,643,695 to 5,644,405
_26110
PS417_26115: PS417_26115 - glutamine ABC transporter ATP-binding protein, at 5,644,513 to 5,645,238
_26115
PS417_26120: PS417_26120 - hypothetical protein, at 5,645,318 to 5,645,935
_26120
PS417_26125: PS417_26125 - glutathione S-transferase, at 5,645,970 to 5,646,599
_26125
Position (kb) 5644
5645
5646 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5643.540 kb on - strand, within PS417_26105 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.896 kb on + strand, within PS417_26110 at 5643.896 kb on + strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.941 kb on + strand, within PS417_26110 at 5643.941 kb on + strand, within PS417_26110 at 5643.941 kb on + strand, within PS417_26110 at 5643.945 kb on - strand, within PS417_26110 at 5643.981 kb on + strand, within PS417_26110 at 5643.982 kb on - strand, within PS417_26110 at 5643.982 kb on - strand, within PS417_26110 at 5644.053 kb on - strand, within PS417_26110 at 5644.311 kb on - strand, within PS417_26110 at 5644.331 kb on + strand, within PS417_26110 at 5644.331 kb on + strand, within PS417_26110 at 5644.331 kb on + strand, within PS417_26110 at 5644.332 kb on - strand, within PS417_26110 at 5644.332 kb on - strand, within PS417_26110 at 5644.332 kb on - strand, within PS417_26110 at 5644.366 kb on + strand at 5644.559 kb on + strand at 5644.731 kb on + strand, within PS417_26115 at 5644.732 kb on - strand, within PS417_26115 at 5644.732 kb on - strand, within PS417_26115 at 5644.910 kb on - strand, within PS417_26115 at 5645.151 kb on + strand, within PS417_26115 at 5645.151 kb on + strand, within PS417_26115 at 5645.281 kb on - strand at 5645.299 kb on + strand at 5645.299 kb on + strand at 5645.300 kb on - strand at 5645.519 kb on + strand, within PS417_26120 at 5645.550 kb on + strand at 5645.811 kb on + strand, within PS417_26120 at 5645.812 kb on - strand, within PS417_26120 at 5645.898 kb on - strand at 5645.903 kb on + strand at 5645.904 kb on - strand at 5646.024 kb on - strand at 5646.202 kb on - strand, within PS417_26125
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours remove 5,643,540 - PS417_26105 0.78 -1.0 5,643,890 + PS417_26110 0.27 -1.0 5,643,890 + PS417_26110 0.27 +0.3 5,643,890 + PS417_26110 0.27 -0.6 5,643,890 + PS417_26110 0.27 -0.2 5,643,890 + PS417_26110 0.27 -0.7 5,643,890 + PS417_26110 0.27 -0.7 5,643,890 + PS417_26110 0.27 -0.3 5,643,890 + PS417_26110 0.27 -0.7 5,643,890 + PS417_26110 0.27 -0.3 5,643,890 + PS417_26110 0.27 -0.3 5,643,890 + PS417_26110 0.27 +0.2 5,643,890 + PS417_26110 0.27 -1.3 5,643,890 + PS417_26110 0.27 -0.0 5,643,890 + PS417_26110 0.27 -1.0 5,643,890 + PS417_26110 0.27 +0.8 5,643,890 + PS417_26110 0.27 -2.1 5,643,891 - PS417_26110 0.28 -0.5 5,643,891 - PS417_26110 0.28 +1.3 5,643,891 - PS417_26110 0.28 +0.3 5,643,891 - PS417_26110 0.28 +0.5 5,643,891 - PS417_26110 0.28 +0.6 5,643,891 - PS417_26110 0.28 -0.3 5,643,891 - PS417_26110 0.28 -1.0 5,643,891 - PS417_26110 0.28 -1.3 5,643,891 - PS417_26110 0.28 +3.2 5,643,892 + PS417_26110 0.28 +0.2 5,643,892 + PS417_26110 0.28 -0.9 5,643,892 + PS417_26110 0.28 -0.3 5,643,892 + PS417_26110 0.28 +0.6 5,643,892 + PS417_26110 0.28 -1.1 5,643,892 + PS417_26110 0.28 -0.7 5,643,892 + PS417_26110 0.28 +0.1 5,643,892 + PS417_26110 0.28 +0.1 5,643,892 + PS417_26110 0.28 +1.3 5,643,892 + PS417_26110 0.28 -0.8 5,643,893 - PS417_26110 0.28 +0.6 5,643,893 - PS417_26110 0.28 -0.3 5,643,893 - PS417_26110 0.28 +1.9 5,643,893 - PS417_26110 0.28 +2.2 5,643,896 + PS417_26110 0.28 +0.4 5,643,896 + PS417_26110 0.28 -1.9 5,643,897 - PS417_26110 0.28 +1.3 5,643,897 - PS417_26110 0.28 +1.5 5,643,897 - PS417_26110 0.28 +0.3 5,643,897 - PS417_26110 0.28 +1.3 5,643,941 + PS417_26110 0.35 -0.1 5,643,941 + PS417_26110 0.35 +2.1 5,643,941 + PS417_26110 0.35 -1.2 5,643,945 - PS417_26110 0.35 +3.3 5,643,981 + PS417_26110 0.40 -0.3 5,643,982 - PS417_26110 0.40 -2.1 5,643,982 - PS417_26110 0.40 -0.5 5,644,053 - PS417_26110 0.50 -0.5 5,644,311 - PS417_26110 0.87 +1.3 5,644,331 + PS417_26110 0.89 -0.4 5,644,331 + PS417_26110 0.89 -1.5 5,644,331 + PS417_26110 0.89 -0.3 5,644,332 - PS417_26110 0.90 +0.3 5,644,332 - PS417_26110 0.90 +0.4 5,644,332 - PS417_26110 0.90 +0.6 5,644,366 + -0.7 5,644,559 + +0.4 5,644,731 + PS417_26115 0.30 +0.2 5,644,732 - PS417_26115 0.30 +0.5 5,644,732 - PS417_26115 0.30 -0.5 5,644,910 - PS417_26115 0.55 +0.3 5,645,151 + PS417_26115 0.88 +1.1 5,645,151 + PS417_26115 0.88 +1.7 5,645,281 - +1.3 5,645,299 + +0.9 5,645,299 + -0.1 5,645,300 - -0.0 5,645,519 + PS417_26120 0.33 +1.3 5,645,550 + -0.2 5,645,811 + PS417_26120 0.80 -2.5 5,645,812 - PS417_26120 0.80 -0.2 5,645,898 - +0.3 5,645,903 + -0.3 5,645,904 - -1.0 5,646,024 - -0.5 5,646,202 - PS417_26125 0.37 +1.0
Or see this region's nucleotide sequence