Experiment: Growth on radish seeds for 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24835 and PS417_24840 are separated by 6 nucleotides PS417_24840 and PS417_24845 are separated by 109 nucleotides PS417_24845 and PS417_24850 are separated by 214 nucleotides
PS417_24835: PS417_24835 - hypothetical protein, at 5,387,061 to 5,387,717
_24835
PS417_24840: PS417_24840 - hypothetical protein, at 5,387,724 to 5,388,539
_24840
PS417_24845: PS417_24845 - inorganic pyrophosphatase, at 5,388,649 to 5,389,176
_24845
PS417_24850: PS417_24850 - transcriptional regulator, at 5,389,391 to 5,390,167
_24850
Position (kb) 5388
5389
5390 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5388.168 kb on + strand, within PS417_24840 at 5388.291 kb on + strand, within PS417_24840 at 5388.292 kb on - strand, within PS417_24840 at 5388.466 kb on - strand at 5388.544 kb on - strand at 5388.582 kb on + strand at 5389.310 kb on + strand at 5389.316 kb on + strand at 5389.317 kb on - strand at 5389.317 kb on - strand at 5389.317 kb on - strand at 5389.328 kb on + strand at 5389.329 kb on - strand at 5389.397 kb on - strand at 5389.670 kb on + strand, within PS417_24850 at 5389.671 kb on - strand, within PS417_24850 at 5389.735 kb on + strand, within PS417_24850 at 5389.735 kb on + strand, within PS417_24850 at 5389.735 kb on + strand, within PS417_24850 at 5389.735 kb on + strand, within PS417_24850 at 5389.735 kb on + strand, within PS417_24850 at 5389.735 kb on + strand, within PS417_24850 at 5389.736 kb on - strand, within PS417_24850 at 5389.736 kb on - strand, within PS417_24850 at 5389.736 kb on - strand, within PS417_24850 at 5389.814 kb on + strand, within PS417_24850 at 5389.815 kb on - strand, within PS417_24850 at 5389.815 kb on - strand, within PS417_24850 at 5389.815 kb on - strand at 5389.943 kb on + strand, within PS417_24850 at 5389.943 kb on + strand, within PS417_24850 at 5389.944 kb on - strand, within PS417_24850 at 5389.944 kb on - strand, within PS417_24850 at 5389.944 kb on - strand, within PS417_24850 at 5389.944 kb on - strand, within PS417_24850 at 5389.950 kb on - strand, within PS417_24850 at 5390.012 kb on + strand, within PS417_24850 at 5390.013 kb on - strand, within PS417_24850 at 5390.013 kb on - strand, within PS417_24850 at 5390.021 kb on + strand, within PS417_24850 at 5390.022 kb on - strand, within PS417_24850 at 5390.022 kb on - strand, within PS417_24850 at 5390.121 kb on + strand at 5390.121 kb on + strand at 5390.122 kb on - strand at 5390.122 kb on - strand at 5390.122 kb on - strand at 5390.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours remove 5,388,168 + PS417_24840 0.54 +3.2 5,388,291 + PS417_24840 0.69 +1.2 5,388,292 - PS417_24840 0.70 -0.4 5,388,466 - -0.3 5,388,544 - -1.3 5,388,582 + -2.5 5,389,310 + +0.4 5,389,316 + -0.2 5,389,317 - +0.8 5,389,317 - +0.2 5,389,317 - -1.6 5,389,328 + +0.2 5,389,329 - +0.1 5,389,397 - -1.4 5,389,670 + PS417_24850 0.36 +0.2 5,389,671 - PS417_24850 0.36 -0.8 5,389,735 + PS417_24850 0.44 +0.2 5,389,735 + PS417_24850 0.44 +1.6 5,389,735 + PS417_24850 0.44 -1.4 5,389,735 + PS417_24850 0.44 +0.7 5,389,735 + PS417_24850 0.44 +0.8 5,389,735 + PS417_24850 0.44 -0.5 5,389,736 - PS417_24850 0.44 +0.7 5,389,736 - PS417_24850 0.44 -0.2 5,389,736 - PS417_24850 0.44 +0.3 5,389,814 + PS417_24850 0.54 -0.0 5,389,815 - PS417_24850 0.55 +0.1 5,389,815 - PS417_24850 0.55 +0.2 5,389,815 - +1.2 5,389,943 + PS417_24850 0.71 -2.4 5,389,943 + PS417_24850 0.71 +0.9 5,389,944 - PS417_24850 0.71 +0.4 5,389,944 - PS417_24850 0.71 +0.3 5,389,944 - PS417_24850 0.71 -2.2 5,389,944 - PS417_24850 0.71 -0.3 5,389,950 - PS417_24850 0.72 -0.6 5,390,012 + PS417_24850 0.80 +0.2 5,390,013 - PS417_24850 0.80 +0.4 5,390,013 - PS417_24850 0.80 +0.8 5,390,021 + PS417_24850 0.81 -0.9 5,390,022 - PS417_24850 0.81 +0.2 5,390,022 - PS417_24850 0.81 -0.5 5,390,121 + -0.8 5,390,121 + -0.4 5,390,122 - -0.8 5,390,122 - -0.1 5,390,122 - +2.0 5,390,174 + +0.2
Or see this region's nucleotide sequence