Experiment: Growth on radish seeds for 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00210 and PS417_00215 are separated by 217 nucleotides PS417_00215 and PS417_00220 are separated by 235 nucleotides PS417_00220 and PS417_00225 are separated by 0 nucleotides
PS417_00210: PS417_00210 - hypothetical protein, at 42,057 to 43,058
_00210
PS417_00215: PS417_00215 - peroxiredoxin OsmC, at 43,276 to 43,707
_00215
PS417_00220: PS417_00220 - hypothetical protein, at 43,943 to 44,182
_00220
PS417_00225: PS417_00225 - hypothetical protein, at 44,183 to 44,605
_00225
Position (kb) 43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 42.347 kb on - strand, within PS417_00210 at 42.347 kb on - strand, within PS417_00210 at 42.534 kb on + strand, within PS417_00210 at 42.534 kb on + strand, within PS417_00210 at 42.534 kb on + strand, within PS417_00210 at 42.535 kb on - strand, within PS417_00210 at 42.623 kb on - strand, within PS417_00210 at 42.623 kb on - strand, within PS417_00210 at 42.902 kb on + strand, within PS417_00210 at 42.902 kb on + strand, within PS417_00210 at 42.903 kb on - strand, within PS417_00210 at 42.903 kb on - strand, within PS417_00210 at 42.934 kb on + strand, within PS417_00210 at 43.039 kb on - strand at 43.059 kb on - strand at 43.059 kb on - strand at 43.143 kb on + strand at 43.144 kb on - strand at 43.146 kb on - strand at 43.276 kb on - strand at 43.281 kb on + strand at 43.281 kb on + strand at 43.338 kb on + strand, within PS417_00215 at 43.339 kb on - strand, within PS417_00215 at 43.339 kb on - strand, within PS417_00215 at 43.361 kb on + strand, within PS417_00215 at 43.362 kb on - strand, within PS417_00215 at 43.526 kb on + strand, within PS417_00215 at 43.526 kb on + strand, within PS417_00215 at 43.527 kb on - strand, within PS417_00215 at 43.665 kb on - strand at 43.700 kb on + strand at 43.700 kb on + strand at 43.701 kb on - strand at 43.716 kb on + strand at 43.717 kb on - strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.842 kb on - strand at 43.845 kb on + strand at 43.846 kb on - strand at 43.852 kb on + strand at 43.885 kb on + strand at 43.885 kb on + strand at 43.885 kb on + strand at 43.885 kb on + strand at 43.886 kb on - strand at 43.886 kb on - strand at 43.887 kb on + strand at 43.892 kb on + strand at 43.893 kb on - strand at 43.893 kb on - strand at 43.902 kb on - strand at 43.977 kb on + strand, within PS417_00220 at 44.070 kb on - strand, within PS417_00220 at 44.246 kb on - strand, within PS417_00225 at 44.283 kb on + strand, within PS417_00225 at 44.283 kb on + strand, within PS417_00225 at 44.284 kb on - strand, within PS417_00225 at 44.337 kb on + strand, within PS417_00225 at 44.338 kb on - strand, within PS417_00225 at 44.631 kb on - strand at 44.631 kb on - strand at 44.631 kb on - strand at 44.631 kb on - strand at 44.664 kb on - strand at 44.669 kb on + strand at 44.669 kb on + strand at 44.670 kb on - strand at 44.670 kb on - strand at 44.670 kb on - strand at 44.670 kb on - strand at 44.671 kb on + strand at 44.671 kb on + strand at 44.671 kb on + strand at 44.672 kb on - strand at 44.672 kb on - strand at 44.672 kb on - strand at 44.672 kb on - strand at 44.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours remove 42,347 - PS417_00210 0.29 +2.5 42,347 - PS417_00210 0.29 -0.4 42,534 + PS417_00210 0.48 -0.5 42,534 + PS417_00210 0.48 +0.9 42,534 + PS417_00210 0.48 +0.5 42,535 - PS417_00210 0.48 -0.2 42,623 - PS417_00210 0.56 -0.9 42,623 - PS417_00210 0.56 -0.7 42,902 + PS417_00210 0.84 -0.0 42,902 + PS417_00210 0.84 -1.2 42,903 - PS417_00210 0.84 -1.7 42,903 - PS417_00210 0.84 -0.9 42,934 + PS417_00210 0.88 -0.5 43,039 - +0.2 43,059 - +0.1 43,059 - +1.5 43,143 + +0.2 43,144 - -0.9 43,146 - -0.7 43,276 - -1.5 43,281 + -1.7 43,281 + -1.5 43,338 + PS417_00215 0.14 +5.0 43,339 - PS417_00215 0.15 +1.2 43,339 - PS417_00215 0.15 +0.6 43,361 + PS417_00215 0.20 +1.3 43,362 - PS417_00215 0.20 +2.3 43,526 + PS417_00215 0.58 -0.3 43,526 + PS417_00215 0.58 -0.3 43,527 - PS417_00215 0.58 -0.2 43,665 - -0.1 43,700 + -2.9 43,700 + +0.5 43,701 - +0.5 43,716 + +0.5 43,717 - +1.1 43,841 + -0.5 43,841 + -0.5 43,841 + +0.1 43,841 + -0.5 43,841 + -1.3 43,842 - -1.5 43,845 + +0.5 43,846 - -1.1 43,852 + -0.1 43,885 + +0.5 43,885 + +1.6 43,885 + +0.5 43,885 + +0.4 43,886 - -1.5 43,886 - +0.1 43,887 + +2.0 43,892 + -0.1 43,893 - +0.1 43,893 - -1.3 43,902 - +1.2 43,977 + PS417_00220 0.14 -0.6 44,070 - PS417_00220 0.53 +1.1 44,246 - PS417_00225 0.15 +0.5 44,283 + PS417_00225 0.24 -1.5 44,283 + PS417_00225 0.24 -1.5 44,284 - PS417_00225 0.24 +0.1 44,337 + PS417_00225 0.36 -0.0 44,338 - PS417_00225 0.37 +0.7 44,631 - +0.4 44,631 - -0.9 44,631 - -1.5 44,631 - +0.5 44,664 - -0.6 44,669 + +1.5 44,669 + +0.5 44,670 - +1.5 44,670 - +0.5 44,670 - +3.0 44,670 - -0.5 44,671 + +0.9 44,671 + +2.9 44,671 + +0.3 44,672 - +1.5 44,672 - +4.0 44,672 - -0.4 44,672 - +0.8 44,672 - -1.5
Or see this region's nucleotide sequence