Experiment: Growth on radish seeds for 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21130 and PS417_21135 are separated by 13 nucleotides PS417_21135 and PS417_21140 overlap by 20 nucleotides
PS417_21130: PS417_21130 - nitrate reductase, at 4,597,964 to 4,599,493
_21130
PS417_21135: PS417_21135 - Asp/Glu/hydantoin racemase, at 4,599,507 to 4,600,223
_21135
PS417_21140: PS417_21140 - LysR family transcriptional regulator, at 4,600,204 to 4,601,133
_21140
Position (kb) 4599
4600
4601 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4598.547 kb on - strand, within PS417_21130 at 4598.630 kb on + strand, within PS417_21130 at 4598.631 kb on - strand, within PS417_21130 at 4598.701 kb on + strand, within PS417_21130 at 4598.701 kb on + strand, within PS417_21130 at 4598.736 kb on - strand, within PS417_21130 at 4599.047 kb on + strand, within PS417_21130 at 4599.047 kb on + strand, within PS417_21130 at 4599.140 kb on + strand, within PS417_21130 at 4599.141 kb on - strand, within PS417_21130 at 4599.141 kb on - strand, within PS417_21130 at 4599.179 kb on + strand, within PS417_21130 at 4599.180 kb on - strand, within PS417_21130 at 4599.180 kb on - strand, within PS417_21130 at 4599.242 kb on + strand, within PS417_21130 at 4599.242 kb on + strand, within PS417_21130 at 4599.242 kb on + strand, within PS417_21130 at 4599.242 kb on + strand, within PS417_21130 at 4599.242 kb on + strand, within PS417_21130 at 4599.243 kb on - strand, within PS417_21130 at 4599.243 kb on - strand, within PS417_21130 at 4599.243 kb on - strand, within PS417_21130 at 4599.270 kb on - strand, within PS417_21130 at 4599.272 kb on + strand, within PS417_21130 at 4599.292 kb on - strand, within PS417_21130 at 4599.292 kb on - strand, within PS417_21130 at 4599.398 kb on - strand at 4599.413 kb on + strand at 4599.413 kb on + strand at 4599.414 kb on - strand at 4599.443 kb on + strand at 4599.491 kb on + strand at 4599.513 kb on - strand at 4599.618 kb on + strand, within PS417_21135 at 4599.657 kb on + strand, within PS417_21135 at 4599.658 kb on - strand, within PS417_21135 at 4599.658 kb on - strand, within PS417_21135 at 4599.658 kb on - strand, within PS417_21135 at 4599.834 kb on + strand, within PS417_21135 at 4599.903 kb on + strand, within PS417_21135 at 4599.904 kb on - strand, within PS417_21135 at 4599.904 kb on - strand, within PS417_21135 at 4599.904 kb on - strand, within PS417_21135 at 4600.179 kb on + strand at 4600.302 kb on + strand, within PS417_21140 at 4600.302 kb on + strand, within PS417_21140 at 4600.303 kb on - strand, within PS417_21140 at 4600.344 kb on - strand, within PS417_21140 at 4600.622 kb on + strand, within PS417_21140 at 4600.817 kb on + strand, within PS417_21140 at 4601.169 kb on - strand at 4601.171 kb on - strand at 4601.184 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours remove 4,598,547 - PS417_21130 0.38 -0.5 4,598,630 + PS417_21130 0.44 +0.3 4,598,631 - PS417_21130 0.44 +0.9 4,598,701 + PS417_21130 0.48 +0.1 4,598,701 + PS417_21130 0.48 -1.1 4,598,736 - PS417_21130 0.50 +1.9 4,599,047 + PS417_21130 0.71 -0.1 4,599,047 + PS417_21130 0.71 -0.7 4,599,140 + PS417_21130 0.77 -0.9 4,599,141 - PS417_21130 0.77 +0.9 4,599,141 - PS417_21130 0.77 -2.5 4,599,179 + PS417_21130 0.79 +0.9 4,599,180 - PS417_21130 0.79 -1.5 4,599,180 - PS417_21130 0.79 -0.3 4,599,242 + PS417_21130 0.84 +1.2 4,599,242 + PS417_21130 0.84 +1.2 4,599,242 + PS417_21130 0.84 -0.1 4,599,242 + PS417_21130 0.84 +0.9 4,599,242 + PS417_21130 0.84 +0.1 4,599,243 - PS417_21130 0.84 +1.5 4,599,243 - PS417_21130 0.84 -0.2 4,599,243 - PS417_21130 0.84 -0.1 4,599,270 - PS417_21130 0.85 -0.2 4,599,272 + PS417_21130 0.85 +0.9 4,599,292 - PS417_21130 0.87 +0.1 4,599,292 - PS417_21130 0.87 +0.2 4,599,398 - -1.7 4,599,413 + +0.5 4,599,413 + -0.4 4,599,414 - -0.7 4,599,443 + +0.3 4,599,491 + -1.1 4,599,513 - -0.9 4,599,618 + PS417_21135 0.15 -0.1 4,599,657 + PS417_21135 0.21 +0.5 4,599,658 - PS417_21135 0.21 -1.1 4,599,658 - PS417_21135 0.21 +0.5 4,599,658 - PS417_21135 0.21 -0.1 4,599,834 + PS417_21135 0.46 -2.3 4,599,903 + PS417_21135 0.55 -1.7 4,599,904 - PS417_21135 0.55 -1.5 4,599,904 - PS417_21135 0.55 -0.0 4,599,904 - PS417_21135 0.55 +0.3 4,600,179 + -1.2 4,600,302 + PS417_21140 0.11 +1.3 4,600,302 + PS417_21140 0.11 +0.5 4,600,303 - PS417_21140 0.11 -1.2 4,600,344 - PS417_21140 0.15 -1.1 4,600,622 + PS417_21140 0.45 -1.5 4,600,817 + PS417_21140 0.66 -1.1 4,601,169 - -0.6 4,601,171 - -1.7 4,601,184 + -0.7
Or see this region's nucleotide sequence