Experiment: Growth on radish seeds for 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01790 and PS417_01795 overlap by 8 nucleotides PS417_01795 and PS417_01800 are separated by 186 nucleotides
PS417_01790: PS417_01790 - glucan biosynthesis protein G, at 397,546 to 399,282
_01790
PS417_01795: PS417_01795 - glucosyltransferase MdoH, at 399,275 to 401,845
_01795
PS417_01800: PS417_01800 - amino acid ABC transporter substrate-binding protein, at 402,032 to 402,832
_01800
Position (kb) 399
400
401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 398.350 kb on + strand, within PS417_01790 at 398.351 kb on - strand, within PS417_01790 at 398.351 kb on - strand, within PS417_01790 at 398.351 kb on - strand, within PS417_01790 at 398.389 kb on + strand, within PS417_01790 at 398.576 kb on - strand, within PS417_01790 at 398.576 kb on - strand, within PS417_01790 at 398.576 kb on - strand, within PS417_01790 at 398.869 kb on + strand, within PS417_01790 at 398.870 kb on - strand, within PS417_01790 at 399.259 kb on + strand at 399.259 kb on + strand at 399.259 kb on + strand at 399.280 kb on + strand at 399.281 kb on - strand at 399.315 kb on - strand at 399.328 kb on - strand at 399.657 kb on + strand, within PS417_01795 at 399.658 kb on - strand, within PS417_01795 at 399.749 kb on + strand, within PS417_01795 at 399.750 kb on - strand, within PS417_01795 at 399.840 kb on + strand, within PS417_01795 at 399.958 kb on + strand, within PS417_01795 at 399.958 kb on + strand, within PS417_01795 at 399.959 kb on - strand, within PS417_01795 at 400.144 kb on + strand, within PS417_01795 at 400.144 kb on + strand, within PS417_01795 at 400.144 kb on + strand, within PS417_01795 at 400.227 kb on - strand, within PS417_01795 at 400.307 kb on + strand, within PS417_01795 at 400.307 kb on + strand, within PS417_01795 at 400.308 kb on + strand, within PS417_01795 at 400.308 kb on - strand, within PS417_01795 at 400.308 kb on - strand, within PS417_01795 at 400.308 kb on - strand, within PS417_01795 at 400.439 kb on + strand, within PS417_01795 at 400.472 kb on + strand, within PS417_01795 at 400.703 kb on + strand, within PS417_01795 at 400.847 kb on + strand, within PS417_01795 at 400.953 kb on - strand, within PS417_01795 at 401.173 kb on - strand, within PS417_01795 at 401.450 kb on + strand, within PS417_01795 at 401.486 kb on + strand, within PS417_01795 at 401.487 kb on - strand, within PS417_01795 at 401.487 kb on - strand, within PS417_01795 at 401.487 kb on - strand, within PS417_01795 at 401.487 kb on - strand, within PS417_01795 at 401.895 kb on + strand at 402.006 kb on + strand at 402.045 kb on - strand at 402.063 kb on + strand at 402.063 kb on + strand at 402.161 kb on + strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand at 402.598 kb on + strand, within PS417_01800 at 402.598 kb on + strand, within PS417_01800 at 402.598 kb on + strand, within PS417_01800 at 402.614 kb on + strand, within PS417_01800 at 402.728 kb on - strand, within PS417_01800 at 402.773 kb on + strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.839 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours remove 398,350 + PS417_01790 0.46 -0.6 398,351 - PS417_01790 0.46 +0.4 398,351 - PS417_01790 0.46 -3.2 398,351 - PS417_01790 0.46 -0.9 398,389 + PS417_01790 0.49 -2.2 398,576 - PS417_01790 0.59 -1.6 398,576 - PS417_01790 0.59 -0.9 398,576 - PS417_01790 0.59 -0.2 398,869 + PS417_01790 0.76 -1.8 398,870 - PS417_01790 0.76 -0.6 399,259 + -0.6 399,259 + +0.1 399,259 + +1.4 399,280 + -1.1 399,281 - -2.4 399,315 - +0.4 399,328 - -1.8 399,657 + PS417_01795 0.15 -2.1 399,658 - PS417_01795 0.15 -0.9 399,749 + PS417_01795 0.18 -1.4 399,750 - PS417_01795 0.18 +0.4 399,840 + PS417_01795 0.22 -1.4 399,958 + PS417_01795 0.27 -0.6 399,958 + PS417_01795 0.27 -1.1 399,959 - PS417_01795 0.27 -2.7 400,144 + PS417_01795 0.34 -1.4 400,144 + PS417_01795 0.34 -2.0 400,144 + PS417_01795 0.34 -1.9 400,227 - PS417_01795 0.37 -0.2 400,307 + PS417_01795 0.40 -1.8 400,307 + PS417_01795 0.40 -0.9 400,308 + PS417_01795 0.40 +0.8 400,308 - PS417_01795 0.40 -0.6 400,308 - PS417_01795 0.40 -1.6 400,308 - PS417_01795 0.40 -1.3 400,439 + PS417_01795 0.45 -2.7 400,472 + PS417_01795 0.47 -0.2 400,703 + PS417_01795 0.56 -1.6 400,847 + PS417_01795 0.61 -1.6 400,953 - PS417_01795 0.65 -2.1 401,173 - PS417_01795 0.74 -1.4 401,450 + PS417_01795 0.85 -0.9 401,486 + PS417_01795 0.86 -2.5 401,487 - PS417_01795 0.86 -2.8 401,487 - PS417_01795 0.86 -2.1 401,487 - PS417_01795 0.86 +1.4 401,487 - PS417_01795 0.86 -1.5 401,895 + +1.4 402,006 + +0.1 402,045 - +0.8 402,063 + +1.0 402,063 + +0.4 402,161 + PS417_01800 0.16 -0.5 402,162 - PS417_01800 0.16 +0.4 402,162 - PS417_01800 0.16 +1.4 402,162 - PS417_01800 0.16 -0.2 402,162 - PS417_01800 0.16 -0.6 402,162 - PS417_01800 0.16 -0.1 402,162 - +0.4 402,598 + PS417_01800 0.71 +1.2 402,598 + PS417_01800 0.71 -0.3 402,598 + PS417_01800 0.71 -1.6 402,614 + PS417_01800 0.73 +1.4 402,728 - PS417_01800 0.87 +0.9 402,773 + -0.5 402,774 - +1.4 402,774 - -0.2 402,774 - -1.8 402,774 - -0.9 402,839 + -0.9
Or see this region's nucleotide sequence