Experiment: Growth on radish seeds for 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00770 and PS417_00775 are separated by 63 nucleotides PS417_00775 and PS417_00780 are separated by 15 nucleotides PS417_00780 and PS417_00785 are separated by 272 nucleotides PS417_00785 and PS417_00790 are separated by 40 nucleotides
PS417_00770: PS417_00770 - autotransporter, at 171,401 to 173,989
_00770
PS417_00775: PS417_00775 - hypothetical protein, at 174,053 to 174,640
_00775
PS417_00780: PS417_00780 - hypothetical protein, at 174,656 to 175,267
_00780
PS417_00785: PS417_00785 - hypothetical protein, at 175,540 to 176,121
_00785
PS417_00790: PS417_00790 - curli production assembly protein CsgG, at 176,162 to 176,842
_00790
Position (kb) 174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 173.672 kb on + strand, within PS417_00770 at 173.807 kb on + strand at 173.808 kb on - strand at 173.808 kb on - strand at 173.860 kb on + strand at 173.861 kb on - strand at 173.861 kb on - strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.864 kb on + strand at 173.865 kb on - strand at 173.865 kb on - strand at 173.865 kb on - strand at 173.865 kb on - strand at 173.888 kb on + strand at 173.889 kb on - strand at 173.889 kb on - strand at 173.922 kb on - strand at 173.922 kb on - strand at 173.988 kb on - strand at 173.997 kb on + strand at 173.997 kb on + strand at 174.005 kb on + strand at 174.005 kb on + strand at 174.005 kb on + strand at 174.006 kb on - strand at 174.088 kb on + strand at 174.088 kb on + strand at 174.313 kb on - strand, within PS417_00775 at 174.313 kb on - strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.345 kb on + strand, within PS417_00775 at 174.346 kb on - strand, within PS417_00775 at 174.346 kb on - strand, within PS417_00775 at 174.346 kb on - strand, within PS417_00775 at 174.493 kb on + strand, within PS417_00775 at 174.494 kb on - strand, within PS417_00775 at 174.494 kb on - strand, within PS417_00775 at 174.494 kb on - strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.501 kb on + strand, within PS417_00775 at 174.502 kb on - strand, within PS417_00775 at 174.502 kb on - strand, within PS417_00775 at 174.502 kb on - strand, within PS417_00775 at 174.657 kb on + strand at 174.757 kb on - strand, within PS417_00780 at 174.757 kb on - strand, within PS417_00780 at 174.770 kb on - strand, within PS417_00780 at 174.864 kb on + strand, within PS417_00780 at 174.864 kb on + strand, within PS417_00780 at 174.864 kb on + strand, within PS417_00780 at 174.865 kb on - strand, within PS417_00780 at 174.865 kb on - strand, within PS417_00780 at 174.865 kb on - strand, within PS417_00780 at 174.961 kb on + strand, within PS417_00780 at 175.026 kb on + strand, within PS417_00780 at 175.200 kb on + strand, within PS417_00780 at 175.201 kb on - strand, within PS417_00780 at 175.201 kb on - strand, within PS417_00780 at 175.322 kb on - strand at 175.360 kb on - strand at 175.360 kb on - strand at 175.397 kb on + strand at 175.425 kb on + strand at 175.425 kb on + strand at 175.426 kb on - strand at 175.506 kb on + strand at 175.506 kb on + strand at 175.556 kb on + strand at 175.603 kb on + strand, within PS417_00785 at 175.603 kb on + strand, within PS417_00785 at 175.604 kb on - strand, within PS417_00785 at 175.606 kb on + strand, within PS417_00785 at 175.606 kb on + strand, within PS417_00785 at 175.606 kb on + strand, within PS417_00785 at 175.607 kb on - strand at 175.607 kb on - strand, within PS417_00785 at 175.607 kb on - strand, within PS417_00785 at 175.819 kb on + strand, within PS417_00785 at 175.819 kb on + strand, within PS417_00785 at 175.820 kb on - strand, within PS417_00785 at 175.820 kb on - strand, within PS417_00785 at 175.820 kb on - strand, within PS417_00785 at 175.820 kb on - strand, within PS417_00785 at 175.832 kb on + strand, within PS417_00785 at 175.906 kb on + strand, within PS417_00785 at 175.907 kb on - strand, within PS417_00785 at 175.907 kb on - strand, within PS417_00785 at 176.062 kb on + strand, within PS417_00785 at 176.062 kb on + strand, within PS417_00785 at 176.062 kb on + strand, within PS417_00785 at 176.063 kb on - strand at 176.063 kb on - strand at 176.150 kb on + strand at 176.151 kb on - strand at 176.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours remove 173,672 + PS417_00770 0.88 -2.1 173,807 + -0.7 173,808 - -2.4 173,808 - -0.3 173,860 + -1.7 173,861 - -1.7 173,861 - +0.2 173,864 + -0.0 173,864 + -0.1 173,864 + -0.6 173,864 + -0.9 173,864 + -1.2 173,864 + +1.2 173,864 + -0.0 173,864 + -1.5 173,864 + -0.5 173,865 - +0.8 173,865 - +1.9 173,865 - -0.5 173,865 - -0.3 173,888 + +0.9 173,889 - -1.0 173,889 - -0.5 173,922 - -0.3 173,922 - +1.1 173,988 - -0.1 173,997 + +0.5 173,997 + +2.8 174,005 + +0.5 174,005 + -0.5 174,005 + -1.5 174,006 - +1.5 174,088 + +0.9 174,088 + +1.2 174,313 - PS417_00775 0.44 +1.5 174,313 - PS417_00775 0.44 -1.2 174,345 + PS417_00775 0.50 -1.2 174,345 + -0.1 174,345 + PS417_00775 0.50 -0.1 174,345 + PS417_00775 0.50 -1.0 174,345 + PS417_00775 0.50 +0.3 174,345 + PS417_00775 0.50 +0.5 174,346 - PS417_00775 0.50 -1.1 174,346 - PS417_00775 0.50 -0.4 174,346 - PS417_00775 0.50 +0.5 174,493 + PS417_00775 0.75 +1.3 174,494 - PS417_00775 0.75 +1.5 174,494 - PS417_00775 0.75 +0.4 174,494 - PS417_00775 0.75 -0.1 174,501 + PS417_00775 0.76 +0.5 174,501 + PS417_00775 0.76 +0.5 174,501 + PS417_00775 0.76 -1.7 174,501 + PS417_00775 0.76 -0.6 174,502 - PS417_00775 0.76 +0.7 174,502 - PS417_00775 0.76 -0.3 174,502 - PS417_00775 0.76 -1.0 174,657 + +0.0 174,757 - PS417_00780 0.17 -0.9 174,757 - PS417_00780 0.17 +2.5 174,770 - PS417_00780 0.19 -0.7 174,864 + PS417_00780 0.34 -0.5 174,864 + PS417_00780 0.34 -2.1 174,864 + PS417_00780 0.34 -1.1 174,865 - PS417_00780 0.34 +2.5 174,865 - PS417_00780 0.34 +0.5 174,865 - PS417_00780 0.34 +0.0 174,961 + PS417_00780 0.50 -0.1 175,026 + PS417_00780 0.60 +2.5 175,200 + PS417_00780 0.89 +0.7 175,201 - PS417_00780 0.89 +0.0 175,201 - PS417_00780 0.89 +1.5 175,322 - +0.5 175,360 - -0.7 175,360 - -0.9 175,397 + -1.4 175,425 + +2.4 175,425 + +1.2 175,426 - -0.4 175,506 + -0.0 175,506 + -0.7 175,556 + -0.1 175,603 + PS417_00785 0.11 -0.6 175,603 + PS417_00785 0.11 -0.2 175,604 - PS417_00785 0.11 +0.7 175,606 + PS417_00785 0.11 -0.2 175,606 + PS417_00785 0.11 -0.4 175,606 + PS417_00785 0.11 +0.1 175,607 - +0.4 175,607 - PS417_00785 0.12 -0.6 175,607 - PS417_00785 0.12 -2.8 175,819 + PS417_00785 0.48 +2.6 175,819 + PS417_00785 0.48 -0.2 175,820 - PS417_00785 0.48 +1.5 175,820 - PS417_00785 0.48 +0.2 175,820 - PS417_00785 0.48 +1.0 175,820 - PS417_00785 0.48 -0.4 175,832 + PS417_00785 0.50 +0.4 175,906 + PS417_00785 0.63 +3.2 175,907 - PS417_00785 0.63 +0.1 175,907 - PS417_00785 0.63 -0.6 176,062 + PS417_00785 0.90 -0.2 176,062 + PS417_00785 0.90 +0.4 176,062 + PS417_00785 0.90 -0.4 176,063 - +2.0 176,063 - -0.4 176,150 + -0.7 176,151 - +0.3 176,151 - +1.4
Or see this region's nucleotide sequence