Experiment: Growth on radish seeds for 72 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06940 and PS417_06945 are separated by 0 nucleotides PS417_06945 and PS417_06950 are separated by 68 nucleotides PS417_06950 and PS417_06955 are separated by 204 nucleotides PS417_06955 and PS417_06960 are separated by 55 nucleotides
PS417_06940: PS417_06940 - MFS transporter permease, at 1,535,867 to 1,537,198
_06940
PS417_06945: PS417_06945 - membrane protein, at 1,537,199 to 1,537,687
_06945
PS417_06950: PS417_06950 - LysR family transcriptional regulator, at 1,537,756 to 1,538,682
_06950
PS417_06955: PS417_06955 - membrane protein, at 1,538,887 to 1,539,414
_06955
PS417_06960: PS417_06960 - membrane protein, at 1,539,470 to 1,539,895
_06960
Position (kb) 1537
1538
1539 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1536.758 kb on + strand, within PS417_06940 at 1536.758 kb on + strand, within PS417_06940 at 1536.758 kb on + strand, within PS417_06940 at 1536.758 kb on + strand, within PS417_06940 at 1536.759 kb on - strand, within PS417_06940 at 1536.759 kb on - strand, within PS417_06940 at 1536.759 kb on - strand, within PS417_06940 at 1536.808 kb on + strand, within PS417_06940 at 1537.096 kb on + strand at 1537.112 kb on + strand at 1537.403 kb on - strand, within PS417_06945 at 1537.484 kb on - strand, within PS417_06945 at 1537.723 kb on + strand at 1538.090 kb on - strand, within PS417_06950 at 1538.285 kb on - strand, within PS417_06950 at 1538.344 kb on + strand, within PS417_06950 at 1538.344 kb on + strand, within PS417_06950 at 1538.345 kb on - strand, within PS417_06950 at 1538.363 kb on + strand, within PS417_06950 at 1538.363 kb on + strand, within PS417_06950 at 1538.363 kb on + strand, within PS417_06950 at 1538.363 kb on + strand at 1538.363 kb on + strand, within PS417_06950 at 1538.363 kb on + strand, within PS417_06950 at 1538.363 kb on + strand, within PS417_06950 at 1538.364 kb on - strand, within PS417_06950 at 1538.364 kb on - strand, within PS417_06950 at 1538.364 kb on - strand, within PS417_06950 at 1538.364 kb on - strand, within PS417_06950 at 1538.364 kb on - strand, within PS417_06950 at 1538.364 kb on - strand, within PS417_06950 at 1538.465 kb on + strand, within PS417_06950 at 1538.466 kb on - strand, within PS417_06950 at 1538.660 kb on + strand at 1539.070 kb on + strand, within PS417_06955 at 1539.070 kb on + strand, within PS417_06955 at 1539.070 kb on + strand, within PS417_06955 at 1539.070 kb on + strand, within PS417_06955 at 1539.230 kb on - strand, within PS417_06955 at 1539.302 kb on + strand, within PS417_06955 at 1539.386 kb on - strand at 1539.390 kb on + strand at 1539.426 kb on + strand at 1539.653 kb on + strand, within PS417_06960 at 1539.653 kb on + strand, within PS417_06960 at 1539.653 kb on + strand, within PS417_06960 at 1539.654 kb on - strand, within PS417_06960 at 1539.654 kb on - strand, within PS417_06960 at 1539.654 kb on - strand, within PS417_06960 at 1539.674 kb on - strand, within PS417_06960
Per-strain Table
Position Strand Gene LocusTag Fraction Growth on radish seeds for 72 hours remove 1,536,758 + PS417_06940 0.67 -0.1 1,536,758 + PS417_06940 0.67 -0.4 1,536,758 + PS417_06940 0.67 +0.7 1,536,758 + PS417_06940 0.67 -0.4 1,536,759 - PS417_06940 0.67 +2.7 1,536,759 - PS417_06940 0.67 +0.1 1,536,759 - PS417_06940 0.67 +0.3 1,536,808 + PS417_06940 0.71 -1.1 1,537,096 + -1.4 1,537,112 + +0.5 1,537,403 - PS417_06945 0.42 +0.5 1,537,484 - PS417_06945 0.58 -1.1 1,537,723 + +0.5 1,538,090 - PS417_06950 0.36 +0.7 1,538,285 - PS417_06950 0.57 +1.5 1,538,344 + PS417_06950 0.63 +0.4 1,538,344 + PS417_06950 0.63 +0.3 1,538,345 - PS417_06950 0.64 +4.4 1,538,363 + PS417_06950 0.65 +1.9 1,538,363 + PS417_06950 0.65 +1.4 1,538,363 + PS417_06950 0.65 -0.2 1,538,363 + +0.9 1,538,363 + PS417_06950 0.65 -0.9 1,538,363 + PS417_06950 0.65 -2.4 1,538,363 + PS417_06950 0.65 -0.5 1,538,364 - PS417_06950 0.66 -0.9 1,538,364 - PS417_06950 0.66 +1.9 1,538,364 - PS417_06950 0.66 -1.7 1,538,364 - PS417_06950 0.66 +0.9 1,538,364 - PS417_06950 0.66 +1.9 1,538,364 - PS417_06950 0.66 +0.1 1,538,465 + PS417_06950 0.76 -1.0 1,538,466 - PS417_06950 0.77 -0.1 1,538,660 + -1.1 1,539,070 + PS417_06955 0.35 +1.3 1,539,070 + PS417_06955 0.35 -0.2 1,539,070 + PS417_06955 0.35 -0.1 1,539,070 + PS417_06955 0.35 +0.3 1,539,230 - PS417_06955 0.65 +0.4 1,539,302 + PS417_06955 0.79 +1.6 1,539,386 - -1.1 1,539,390 + -1.4 1,539,426 + +0.3 1,539,653 + PS417_06960 0.43 -0.1 1,539,653 + PS417_06960 0.43 +0.9 1,539,653 + PS417_06960 0.43 +1.1 1,539,654 - PS417_06960 0.43 +0.5 1,539,654 - PS417_06960 0.43 -1.8 1,539,654 - PS417_06960 0.43 +0.7 1,539,674 - PS417_06960 0.48 -0.7
Or see this region's nucleotide sequence