Experiment: KB with Cotarnine Chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4909 and Psyr_4910 are separated by 39 nucleotides Psyr_4910 and Psyr_4911 are separated by 372 nucleotides
Psyr_4909: Psyr_4909 - gamma-aminobutyrate:proton symporter, AAT family, at 5,821,554 to 5,822,945
_4909
Psyr_4910: Psyr_4910 - hypothetical protein, at 5,822,985 to 5,823,242
_4910
Psyr_4911: Psyr_4911 - amino acid ABC transporter ATP-binding protein, PAAT family, at 5,823,615 to 5,824,388
_4911
Position (kb) 5822
5823
5824 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5822.200 kb on + strand, within Psyr_4909 at 5822.200 kb on + strand, within Psyr_4909 at 5822.200 kb on + strand, within Psyr_4909 at 5822.200 kb on + strand, within Psyr_4909 at 5822.200 kb on + strand, within Psyr_4909 at 5822.200 kb on + strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.201 kb on - strand, within Psyr_4909 at 5822.503 kb on + strand, within Psyr_4909 at 5822.503 kb on + strand, within Psyr_4909 at 5822.503 kb on + strand, within Psyr_4909 at 5822.504 kb on - strand, within Psyr_4909 at 5822.504 kb on - strand, within Psyr_4909 at 5822.654 kb on - strand, within Psyr_4909 at 5822.654 kb on - strand, within Psyr_4909 at 5822.704 kb on + strand, within Psyr_4909 at 5822.704 kb on + strand, within Psyr_4909 at 5822.704 kb on + strand, within Psyr_4909 at 5822.704 kb on + strand, within Psyr_4909 at 5822.704 kb on + strand, within Psyr_4909 at 5822.705 kb on - strand, within Psyr_4909 at 5822.705 kb on - strand, within Psyr_4909 at 5822.770 kb on - strand, within Psyr_4909 at 5822.795 kb on - strand, within Psyr_4909 at 5822.888 kb on + strand at 5822.888 kb on + strand at 5822.889 kb on - strand at 5822.889 kb on - strand at 5822.930 kb on + strand at 5822.945 kb on + strand at 5822.945 kb on + strand at 5822.945 kb on + strand at 5822.946 kb on - strand at 5822.946 kb on - strand at 5823.003 kb on - strand at 5823.018 kb on - strand, within Psyr_4910 at 5823.066 kb on + strand, within Psyr_4910 at 5823.067 kb on - strand, within Psyr_4910 at 5823.073 kb on + strand, within Psyr_4910 at 5823.074 kb on - strand, within Psyr_4910 at 5823.074 kb on - strand, within Psyr_4910 at 5823.074 kb on - strand, within Psyr_4910 at 5823.133 kb on + strand, within Psyr_4910 at 5823.165 kb on + strand, within Psyr_4910 at 5823.165 kb on + strand, within Psyr_4910 at 5823.165 kb on + strand, within Psyr_4910 at 5823.307 kb on + strand at 5823.348 kb on - strand at 5823.348 kb on - strand at 5823.412 kb on + strand at 5823.412 kb on + strand at 5823.460 kb on + strand at 5823.467 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.533 kb on + strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.534 kb on - strand at 5823.564 kb on + strand at 5823.565 kb on - strand at 5823.565 kb on - strand at 5823.565 kb on - strand at 5823.663 kb on + strand at 5823.689 kb on + strand at 5823.690 kb on - strand at 5824.036 kb on + strand, within Psyr_4911 at 5824.036 kb on + strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.037 kb on - strand, within Psyr_4911 at 5824.041 kb on - strand, within Psyr_4911 at 5824.062 kb on + strand, within Psyr_4911 at 5824.189 kb on + strand, within Psyr_4911 at 5824.190 kb on - strand, within Psyr_4911 at 5824.190 kb on - strand, within Psyr_4911 at 5824.190 kb on - strand, within Psyr_4911 at 5824.190 kb on - strand, within Psyr_4911
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Cotarnine Chloride 10 mM remove 5,822,200 + Psyr_4909 0.46 -0.1 5,822,200 + Psyr_4909 0.46 -0.3 5,822,200 + Psyr_4909 0.46 -1.2 5,822,200 + Psyr_4909 0.46 -0.1 5,822,200 + Psyr_4909 0.46 -1.1 5,822,200 + Psyr_4909 0.46 -0.3 5,822,201 - Psyr_4909 0.46 +0.4 5,822,201 - Psyr_4909 0.46 +0.2 5,822,201 - Psyr_4909 0.46 -0.6 5,822,201 - Psyr_4909 0.46 +0.6 5,822,201 - Psyr_4909 0.46 +1.2 5,822,201 - Psyr_4909 0.46 +0.2 5,822,201 - Psyr_4909 0.46 +1.2 5,822,201 - Psyr_4909 0.46 -0.0 5,822,201 - Psyr_4909 0.46 -0.4 5,822,201 - Psyr_4909 0.46 -0.2 5,822,503 + Psyr_4909 0.68 +0.8 5,822,503 + Psyr_4909 0.68 -1.7 5,822,503 + Psyr_4909 0.68 +1.5 5,822,504 - Psyr_4909 0.68 -0.7 5,822,504 - Psyr_4909 0.68 -0.4 5,822,654 - Psyr_4909 0.79 +0.5 5,822,654 - Psyr_4909 0.79 +0.3 5,822,704 + Psyr_4909 0.83 -0.1 5,822,704 + Psyr_4909 0.83 +0.0 5,822,704 + Psyr_4909 0.83 -0.7 5,822,704 + Psyr_4909 0.83 -0.8 5,822,704 + Psyr_4909 0.83 +0.3 5,822,705 - Psyr_4909 0.83 +0.4 5,822,705 - Psyr_4909 0.83 -0.5 5,822,770 - Psyr_4909 0.87 +1.1 5,822,795 - Psyr_4909 0.89 -0.1 5,822,888 + +0.3 5,822,888 + +0.1 5,822,889 - -0.4 5,822,889 - -0.5 5,822,930 + +0.1 5,822,945 + +0.4 5,822,945 + -0.1 5,822,945 + +0.4 5,822,946 - +1.0 5,822,946 - -0.1 5,823,003 - -1.0 5,823,018 - Psyr_4910 0.13 -0.3 5,823,066 + Psyr_4910 0.31 -0.6 5,823,067 - Psyr_4910 0.32 -0.7 5,823,073 + Psyr_4910 0.34 -1.1 5,823,074 - Psyr_4910 0.34 -1.1 5,823,074 - Psyr_4910 0.34 +0.4 5,823,074 - Psyr_4910 0.34 -0.0 5,823,133 + Psyr_4910 0.57 -0.1 5,823,165 + Psyr_4910 0.70 -0.3 5,823,165 + Psyr_4910 0.70 -0.4 5,823,165 + Psyr_4910 0.70 -0.4 5,823,307 + +1.5 5,823,348 - +0.4 5,823,348 - +0.6 5,823,412 + +0.3 5,823,412 + +0.3 5,823,460 + +0.5 5,823,467 + +0.1 5,823,533 + -0.6 5,823,533 + -0.1 5,823,533 + -0.6 5,823,533 + +0.3 5,823,533 + +0.3 5,823,533 + +0.1 5,823,533 + +0.3 5,823,533 + -0.8 5,823,533 + -0.2 5,823,533 + +0.3 5,823,533 + -0.1 5,823,534 - +0.5 5,823,534 - -0.9 5,823,534 - +1.1 5,823,534 - +0.4 5,823,534 - +0.2 5,823,564 + +0.4 5,823,565 - +0.8 5,823,565 - -1.1 5,823,565 - -0.4 5,823,663 + -1.1 5,823,689 + +0.2 5,823,690 - +1.8 5,824,036 + Psyr_4911 0.54 +0.1 5,824,036 + Psyr_4911 0.54 -0.9 5,824,037 - Psyr_4911 0.55 -0.7 5,824,037 - Psyr_4911 0.55 -0.5 5,824,037 - Psyr_4911 0.55 -1.0 5,824,037 - Psyr_4911 0.55 +1.2 5,824,037 - Psyr_4911 0.55 +0.1 5,824,037 - Psyr_4911 0.55 -0.8 5,824,037 - Psyr_4911 0.55 -0.0 5,824,037 - Psyr_4911 0.55 -0.6 5,824,037 - Psyr_4911 0.55 +1.6 5,824,037 - Psyr_4911 0.55 +0.2 5,824,037 - Psyr_4911 0.55 +1.1 5,824,041 - Psyr_4911 0.55 -0.8 5,824,062 + Psyr_4911 0.58 -1.3 5,824,189 + Psyr_4911 0.74 -0.4 5,824,190 - Psyr_4911 0.74 -0.5 5,824,190 - Psyr_4911 0.74 +0.5 5,824,190 - Psyr_4911 0.74 -0.1 5,824,190 - Psyr_4911 0.74 -1.9
Or see this region's nucleotide sequence