Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2373

Experiment: KB with Cotarnine Chloride 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2372 and Psyr_2373 are separated by 16 nucleotidesPsyr_2373 and Psyr_2374 are separated by 58 nucleotides Psyr_2372: Psyr_2372 - L-arabinose ABC transporter ATP-binding protein, at 2,750,360 to 2,751,883 _2372 Psyr_2373: Psyr_2373 - L-arabinose ABC transporter membrane protein, at 2,751,900 to 2,752,889 _2373 Psyr_2374: Psyr_2374 - ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal, at 2,752,948 to 2,754,252 _2374 Position (kb) 2751 2752 2753Strain fitness (log2 ratio) -3 -2 -1 0 1at 2751.122 kb on + strand, within Psyr_2372at 2751.122 kb on + strand, within Psyr_2372at 2751.122 kb on + strand, within Psyr_2372at 2751.123 kb on - strand, within Psyr_2372at 2751.123 kb on - strand, within Psyr_2372at 2751.693 kb on - strand, within Psyr_2372at 2751.908 kb on + strandat 2751.909 kb on - strandat 2751.923 kb on + strandat 2751.923 kb on + strandat 2751.923 kb on + strandat 2751.923 kb on + strandat 2751.923 kb on + strandat 2751.923 kb on + strandat 2751.923 kb on + strandat 2751.924 kb on - strandat 2751.924 kb on - strandat 2751.924 kb on - strandat 2751.924 kb on - strandat 2751.924 kb on - strandat 2752.046 kb on + strand, within Psyr_2373at 2752.099 kb on + strand, within Psyr_2373at 2752.099 kb on + strand, within Psyr_2373at 2752.099 kb on + strand, within Psyr_2373at 2752.104 kb on - strand, within Psyr_2373at 2752.222 kb on + strand, within Psyr_2373at 2752.223 kb on - strand, within Psyr_2373at 2752.223 kb on - strand, within Psyr_2373at 2752.223 kb on - strand, within Psyr_2373at 2752.357 kb on - strand, within Psyr_2373at 2752.357 kb on - strand, within Psyr_2373at 2752.428 kb on + strand, within Psyr_2373at 2752.471 kb on + strand, within Psyr_2373at 2752.471 kb on + strand, within Psyr_2373at 2752.494 kb on + strand, within Psyr_2373at 2752.494 kb on + strand, within Psyr_2373at 2752.494 kb on + strand, within Psyr_2373at 2752.495 kb on - strand, within Psyr_2373at 2752.503 kb on + strand, within Psyr_2373at 2752.627 kb on + strand, within Psyr_2373at 2752.628 kb on - strand, within Psyr_2373at 2752.706 kb on - strand, within Psyr_2373at 2752.815 kb on - strandat 2752.821 kb on + strandat 2752.822 kb on - strandat 2752.822 kb on - strandat 2752.827 kb on + strandat 2752.827 kb on + strandat 2752.827 kb on + strandat 2752.828 kb on - strandat 2752.919 kb on + strandat 2752.919 kb on + strandat 2752.919 kb on + strandat 2752.919 kb on + strandat 2752.920 kb on - strandat 2752.920 kb on - strandat 2752.920 kb on - strandat 2752.920 kb on - strandat 2752.920 kb on - strandat 2752.923 kb on + strandat 2752.923 kb on + strandat 2752.923 kb on + strandat 2752.923 kb on + strandat 2752.923 kb on + strandat 2752.924 kb on - strandat 2752.924 kb on - strandat 2752.924 kb on - strandat 2752.924 kb on - strandat 2752.924 kb on - strandat 2753.040 kb on + strandat 2753.040 kb on + strandat 2753.040 kb on + strandat 2753.040 kb on + strandat 2753.040 kb on + strandat 2753.041 kb on - strandat 2753.112 kb on - strand, within Psyr_2374at 2753.204 kb on + strand, within Psyr_2374at 2753.211 kb on + strand, within Psyr_2374at 2753.417 kb on + strand, within Psyr_2374at 2753.418 kb on - strand, within Psyr_2374at 2753.667 kb on - strand, within Psyr_2374at 2753.757 kb on - strand, within Psyr_2374

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Cotarnine Chloride 10 mM
remove
2,751,122 + Psyr_2372 0.50 -0.1
2,751,122 + Psyr_2372 0.50 +0.7
2,751,122 + Psyr_2372 0.50 -0.1
2,751,123 - Psyr_2372 0.50 +0.9
2,751,123 - Psyr_2372 0.50 +0.8
2,751,693 - Psyr_2372 0.87 -0.8
2,751,908 + +0.3
2,751,909 - +1.2
2,751,923 + -0.0
2,751,923 + +1.4
2,751,923 + +0.8
2,751,923 + +1.2
2,751,923 + -0.8
2,751,923 + -1.5
2,751,923 + +1.2
2,751,924 - +0.2
2,751,924 - -0.8
2,751,924 - -0.1
2,751,924 - +0.3
2,751,924 - +0.2
2,752,046 + Psyr_2373 0.15 +0.7
2,752,099 + Psyr_2373 0.20 -0.1
2,752,099 + Psyr_2373 0.20 +0.2
2,752,099 + Psyr_2373 0.20 +1.0
2,752,104 - Psyr_2373 0.21 +0.0
2,752,222 + Psyr_2373 0.33 -0.5
2,752,223 - Psyr_2373 0.33 +1.0
2,752,223 - Psyr_2373 0.33 -0.6
2,752,223 - Psyr_2373 0.33 +1.4
2,752,357 - Psyr_2373 0.46 -0.4
2,752,357 - Psyr_2373 0.46 +1.1
2,752,428 + Psyr_2373 0.53 +1.6
2,752,471 + Psyr_2373 0.58 +0.5
2,752,471 + Psyr_2373 0.58 +1.6
2,752,494 + Psyr_2373 0.60 +0.7
2,752,494 + Psyr_2373 0.60 +0.2
2,752,494 + Psyr_2373 0.60 -0.3
2,752,495 - Psyr_2373 0.60 +1.2
2,752,503 + Psyr_2373 0.61 +1.2
2,752,627 + Psyr_2373 0.73 -0.4
2,752,628 - Psyr_2373 0.74 -0.6
2,752,706 - Psyr_2373 0.81 +1.6
2,752,815 - -0.5
2,752,821 + +0.4
2,752,822 - +0.5
2,752,822 - +0.5
2,752,827 + +0.4
2,752,827 + +0.3
2,752,827 + +0.2
2,752,828 - -1.3
2,752,919 + +0.4
2,752,919 + +0.0
2,752,919 + +0.2
2,752,919 + -0.4
2,752,920 - -0.3
2,752,920 - -3.0
2,752,920 - +0.8
2,752,920 - -0.6
2,752,920 - -0.5
2,752,923 + +0.2
2,752,923 + -0.4
2,752,923 + -0.3
2,752,923 + -0.6
2,752,923 + -0.2
2,752,924 - -1.6
2,752,924 - -1.7
2,752,924 - -0.3
2,752,924 - +0.2
2,752,924 - -0.9
2,753,040 + +0.3
2,753,040 + +0.8
2,753,040 + +0.0
2,753,040 + +0.2
2,753,040 + +0.2
2,753,041 - +0.2
2,753,112 - Psyr_2374 0.13 +0.3
2,753,204 + Psyr_2374 0.20 +0.1
2,753,211 + Psyr_2374 0.20 -0.6
2,753,417 + Psyr_2374 0.36 -0.2
2,753,418 - Psyr_2374 0.36 +0.3
2,753,667 - Psyr_2374 0.55 -0.1
2,753,757 - Psyr_2374 0.62 -0.7

Or see this region's nucleotide sequence