Experiment: KB with Cantharidin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4000 and Psyr_4001 are separated by 167 nucleotides Psyr_4001 and Psyr_4002 are separated by 145 nucleotides Psyr_4002 and Psyr_4003 are separated by 0 nucleotides Psyr_4003 and Psyr_4004 are separated by 462 nucleotides
Psyr_4000: Psyr_4000 - hypothetical protein, at 4,764,833 to 4,765,087
_4000
Psyr_4001: Psyr_4001 - conserved domain protein, at 4,765,255 to 4,765,572
_4001
Psyr_4002: Psyr_4002 - conserved hypothetical protein, at 4,765,718 to 4,766,341
_4002
Psyr_4003: Psyr_4003 - conserved hypothetical protein, at 4,766,342 to 4,766,581
_4003
Psyr_4004: Psyr_4004 - Drug resistance transporter EmrB/QacA subfamily, at 4,767,044 to 4,768,540
_4004
Position (kb) 4765
4766
4767 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4764.775 kb on - strand at 4764.775 kb on - strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.848 kb on + strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.849 kb on - strand at 4764.850 kb on + strand at 4764.896 kb on + strand, within Psyr_4000 at 4764.896 kb on + strand, within Psyr_4000 at 4764.896 kb on + strand, within Psyr_4000 at 4764.896 kb on + strand, within Psyr_4000 at 4764.896 kb on + strand, within Psyr_4000 at 4764.896 kb on + strand, within Psyr_4000 at 4764.897 kb on - strand, within Psyr_4000 at 4764.897 kb on - strand, within Psyr_4000 at 4764.897 kb on - strand, within Psyr_4000 at 4764.897 kb on - strand, within Psyr_4000 at 4764.908 kb on + strand, within Psyr_4000 at 4764.926 kb on + strand, within Psyr_4000 at 4764.927 kb on - strand, within Psyr_4000 at 4764.953 kb on + strand, within Psyr_4000 at 4764.954 kb on - strand, within Psyr_4000 at 4764.954 kb on - strand, within Psyr_4000 at 4764.954 kb on - strand, within Psyr_4000 at 4764.954 kb on - strand, within Psyr_4000 at 4764.980 kb on - strand, within Psyr_4000 at 4765.028 kb on - strand, within Psyr_4000 at 4765.061 kb on + strand, within Psyr_4000 at 4765.061 kb on + strand, within Psyr_4000 at 4765.129 kb on - strand at 4765.139 kb on - strand at 4765.169 kb on + strand at 4765.170 kb on - strand at 4765.679 kb on + strand at 4765.680 kb on - strand at 4765.680 kb on - strand at 4765.680 kb on - strand at 4765.680 kb on - strand at 4765.694 kb on + strand at 4765.730 kb on - strand at 4765.739 kb on + strand at 4765.740 kb on - strand at 4765.791 kb on + strand, within Psyr_4002 at 4765.856 kb on + strand, within Psyr_4002 at 4765.856 kb on + strand, within Psyr_4002 at 4765.857 kb on - strand, within Psyr_4002 at 4765.857 kb on - strand, within Psyr_4002 at 4765.857 kb on - strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.880 kb on + strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.881 kb on - strand, within Psyr_4002 at 4765.933 kb on + strand, within Psyr_4002 at 4765.934 kb on - strand, within Psyr_4002 at 4765.934 kb on - strand, within Psyr_4002 at 4766.091 kb on + strand, within Psyr_4002 at 4766.237 kb on + strand, within Psyr_4002 at 4766.237 kb on + strand, within Psyr_4002 at 4766.288 kb on + strand at 4766.288 kb on + strand at 4766.288 kb on + strand at 4766.289 kb on - strand at 4766.289 kb on - strand at 4766.289 kb on - strand at 4766.516 kb on - strand, within Psyr_4003 at 4766.516 kb on - strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.517 kb on + strand, within Psyr_4003 at 4766.518 kb on - strand, within Psyr_4003 at 4766.518 kb on - strand, within Psyr_4003 at 4766.565 kb on + strand at 4766.565 kb on + strand at 4766.565 kb on + strand at 4766.565 kb on + strand at 4766.566 kb on - strand at 4766.566 kb on - strand at 4766.601 kb on - strand at 4766.601 kb on - strand at 4766.601 kb on - strand at 4766.601 kb on - strand at 4766.601 kb on - strand at 4766.619 kb on + strand at 4766.692 kb on + strand at 4766.692 kb on + strand at 4766.693 kb on - strand at 4766.700 kb on - strand at 4766.733 kb on + strand at 4766.734 kb on - strand at 4766.734 kb on - strand at 4766.734 kb on - strand at 4766.796 kb on - strand at 4766.805 kb on - strand at 4766.805 kb on - strand at 4766.805 kb on - strand at 4766.805 kb on - strand at 4766.805 kb on - strand at 4766.806 kb on + strand at 4766.806 kb on + strand at 4766.807 kb on - strand at 4766.807 kb on - strand at 4766.826 kb on + strand at 4766.851 kb on + strand at 4766.851 kb on + strand at 4766.851 kb on + strand at 4766.851 kb on + strand at 4766.852 kb on - strand at 4766.865 kb on + strand at 4766.865 kb on + strand at 4766.866 kb on - strand at 4766.866 kb on - strand at 4766.967 kb on + strand at 4767.055 kb on + strand at 4767.056 kb on - strand at 4767.186 kb on + strand at 4767.187 kb on - strand at 4767.209 kb on + strand, within Psyr_4004 at 4767.209 kb on + strand, within Psyr_4004 at 4767.209 kb on + strand, within Psyr_4004 at 4767.209 kb on + strand, within Psyr_4004 at 4767.209 kb on + strand, within Psyr_4004 at 4767.210 kb on - strand, within Psyr_4004 at 4767.210 kb on - strand, within Psyr_4004 at 4767.210 kb on - strand, within Psyr_4004 at 4767.210 kb on - strand, within Psyr_4004 at 4767.242 kb on + strand, within Psyr_4004 at 4767.242 kb on + strand, within Psyr_4004 at 4767.243 kb on - strand, within Psyr_4004 at 4767.305 kb on - strand, within Psyr_4004
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Cantharidin 10 mM remove 4,764,775 - -0.3 4,764,775 - -2.1 4,764,848 + -0.4 4,764,848 + +0.6 4,764,848 + +0.1 4,764,848 + -0.5 4,764,848 + -0.9 4,764,848 + -0.4 4,764,848 + +0.4 4,764,848 + +0.6 4,764,848 + -2.0 4,764,849 - -0.0 4,764,849 - -0.4 4,764,849 - -0.2 4,764,849 - -0.3 4,764,849 - -0.2 4,764,849 - +1.0 4,764,849 - -0.8 4,764,850 + -1.4 4,764,896 + Psyr_4000 0.25 -0.3 4,764,896 + Psyr_4000 0.25 -0.6 4,764,896 + Psyr_4000 0.25 -0.9 4,764,896 + Psyr_4000 0.25 -0.6 4,764,896 + Psyr_4000 0.25 -0.6 4,764,896 + Psyr_4000 0.25 +0.1 4,764,897 - Psyr_4000 0.25 -0.4 4,764,897 - Psyr_4000 0.25 +0.4 4,764,897 - Psyr_4000 0.25 +0.5 4,764,897 - Psyr_4000 0.25 +0.2 4,764,908 + Psyr_4000 0.29 -0.4 4,764,926 + Psyr_4000 0.36 -1.4 4,764,927 - Psyr_4000 0.37 -0.4 4,764,953 + Psyr_4000 0.47 +0.5 4,764,954 - Psyr_4000 0.47 +0.1 4,764,954 - Psyr_4000 0.47 +1.0 4,764,954 - Psyr_4000 0.47 +0.3 4,764,954 - Psyr_4000 0.47 -0.3 4,764,980 - Psyr_4000 0.58 -2.7 4,765,028 - Psyr_4000 0.76 -0.3 4,765,061 + Psyr_4000 0.89 +0.2 4,765,061 + Psyr_4000 0.89 +0.5 4,765,129 - +0.5 4,765,139 - +0.1 4,765,169 + +1.6 4,765,170 - -0.5 4,765,679 + +0.4 4,765,680 - +0.2 4,765,680 - -0.3 4,765,680 - -1.4 4,765,680 - -0.4 4,765,694 + +0.5 4,765,730 - +0.6 4,765,739 + +2.2 4,765,740 - +0.2 4,765,791 + Psyr_4002 0.12 +0.2 4,765,856 + Psyr_4002 0.22 +1.1 4,765,856 + Psyr_4002 0.22 -0.3 4,765,857 - Psyr_4002 0.22 +0.7 4,765,857 - Psyr_4002 0.22 +2.2 4,765,857 - Psyr_4002 0.22 +0.3 4,765,880 + Psyr_4002 0.26 -0.6 4,765,880 + Psyr_4002 0.26 -0.0 4,765,880 + Psyr_4002 0.26 +0.1 4,765,880 + Psyr_4002 0.26 +1.1 4,765,881 - Psyr_4002 0.26 +0.3 4,765,881 - Psyr_4002 0.26 +0.8 4,765,881 - Psyr_4002 0.26 -0.9 4,765,881 - Psyr_4002 0.26 -0.4 4,765,881 - Psyr_4002 0.26 -0.5 4,765,881 - Psyr_4002 0.26 +0.5 4,765,881 - Psyr_4002 0.26 -0.2 4,765,933 + Psyr_4002 0.34 -1.5 4,765,934 - Psyr_4002 0.35 +0.6 4,765,934 - Psyr_4002 0.35 +0.8 4,766,091 + Psyr_4002 0.60 +0.2 4,766,237 + Psyr_4002 0.83 -1.0 4,766,237 + Psyr_4002 0.83 -0.3 4,766,288 + -0.3 4,766,288 + +0.4 4,766,288 + -0.1 4,766,289 - +1.2 4,766,289 - -1.4 4,766,289 - +0.2 4,766,516 - Psyr_4003 0.72 -0.5 4,766,516 - Psyr_4003 0.72 -0.7 4,766,517 + Psyr_4003 0.73 -1.1 4,766,517 + Psyr_4003 0.73 -0.6 4,766,518 - Psyr_4003 0.73 -0.9 4,766,518 - Psyr_4003 0.73 +0.2 4,766,565 + -2.4 4,766,565 + +1.0 4,766,565 + -0.5 4,766,565 + -0.4 4,766,566 - -0.4 4,766,566 - -0.6 4,766,601 - -0.6 4,766,601 - -0.7 4,766,601 - +0.2 4,766,601 - +0.5 4,766,601 - +1.0 4,766,619 + +0.1 4,766,692 + -0.7 4,766,692 + +0.6 4,766,693 - -1.6 4,766,700 - -0.7 4,766,733 + +0.6 4,766,734 - -0.0 4,766,734 - +0.5 4,766,734 - -0.2 4,766,796 - -0.2 4,766,805 - +0.2 4,766,805 - -0.3 4,766,805 - -1.1 4,766,805 - +1.1 4,766,805 - +0.5 4,766,806 + -2.3 4,766,806 + -0.7 4,766,807 - -1.5 4,766,807 - -0.5 4,766,826 + +0.0 4,766,851 + -0.5 4,766,851 + +0.9 4,766,851 + -0.3 4,766,851 + -1.0 4,766,852 - -0.4 4,766,865 + -2.1 4,766,865 + -0.1 4,766,866 - -2.1 4,766,866 - +0.4 4,766,967 + +0.4 4,767,055 + -0.6 4,767,056 - +0.6 4,767,186 + -0.1 4,767,187 - +1.2 4,767,209 + Psyr_4004 0.11 +0.7 4,767,209 + Psyr_4004 0.11 -0.1 4,767,209 + Psyr_4004 0.11 -1.0 4,767,209 + Psyr_4004 0.11 +0.9 4,767,209 + Psyr_4004 0.11 +1.7 4,767,210 - Psyr_4004 0.11 -0.2 4,767,210 - Psyr_4004 0.11 +0.1 4,767,210 - Psyr_4004 0.11 +0.1 4,767,210 - Psyr_4004 0.11 -0.5 4,767,242 + Psyr_4004 0.13 +0.5 4,767,242 + Psyr_4004 0.13 -0.6 4,767,243 - Psyr_4004 0.13 +0.2 4,767,305 - Psyr_4004 0.17 -1.0
Or see this region's nucleotide sequence